Skip to content

1174 Use DIVI data to scale initial values for LCT model#1175

Merged
annawendler merged 4 commits intomainfrom
1174-use-divi-data-to-scale-initial-values-for-lct-model
Jan 17, 2025
Merged

1174 Use DIVI data to scale initial values for LCT model#1175
annawendler merged 4 commits intomainfrom
1174-use-divi-data-to-scale-initial-values-for-lct-model

Conversation

@lenaploetzke
Copy link
Member

@lenaploetzke lenaploetzke commented Jan 8, 2025

Changes and Information

Please briefly list the changes (main added features, changed items, or corrected bugs) made:

  • Method to calculate an initial value vector for an LCT model using reported RKI data now provides the option to scale the result so that the number of ICU patients equals the reported number in the DIVI data set.
  • Added tests.

If need be, add additional information and what the reviewer should look out for in particular:

  • %

Merge Request - Guideline Checklist

Please check our git workflow. Use the draft feature if the Pull Request is not yet ready to review.

Checks by code author

  • Every addressed issue is linked (use the "Closes #ISSUE" keyword below)
  • New code adheres to coding guidelines
  • No large data files have been added (files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.)
  • Tests are added for new functionality and a local test run was successful (with and without OpenMP)
  • Appropriate documentation for new functionality has been added (Doxygen in the code and Markdown files if necessary)
  • Proper attention to licenses, especially no new third-party software with conflicting license has been added
  • (For ABM development) Checked benchmark results and ran and posted a local test above from before and after development to ensure performance is monitored.

Checks by code reviewer(s)

  • Corresponding issue(s) is/are linked and addressed
  • Code is clean of development artifacts (no deactivated or commented code lines, no debugging printouts, etc.)
  • Appropriate unit tests have been added, CI passes, code coverage and performance is acceptable (did not decrease)
  • No large data files added in the whole history of commits(files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.)
  • On merge, add 2-5 lines with the changes (main added features, changed items, or corrected bugs) to the merge-commit-message. This can be taken from the briefly-list-the-changes above (best case) or the separate commit messages (worst case).

Closes #1174 .

@lenaploetzke lenaploetzke self-assigned this Jan 8, 2025
@lenaploetzke lenaploetzke linked an issue Jan 8, 2025 that may be closed by this pull request
2 tasks
@codecov
Copy link

codecov bot commented Jan 8, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 96.98%. Comparing base (0c4965a) to head (bbf67f0).
Report is 4 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1175      +/-   ##
==========================================
+ Coverage   96.97%   96.98%   +0.01%     
==========================================
  Files         148      148              
  Lines       13718    13783      +65     
==========================================
+ Hits        13303    13368      +65     
  Misses        415      415              

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@lenaploetzke lenaploetzke mentioned this pull request Jan 9, 2025
12 tasks
lenaploetzke and others added 3 commits January 17, 2025 09:50
Co-authored-by: annawendler <106674756+annawendler@users.noreply.github.com>
Co-authored-by: annawendler <106674756+annawendler@users.noreply.github.com>
@annawendler annawendler merged commit 339768e into main Jan 17, 2025
58 checks passed
@annawendler annawendler deleted the 1174-use-divi-data-to-scale-initial-values-for-lct-model branch January 17, 2025 11:48
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

Use DIVI data to scale initial values for LCT model

2 participants