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Merged
gregorgorjanc merged 6 commits into from
Apr 10, 2026
Merged

add site and mutation table rows #130

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6be0402
update wordlist and add sites and mutations rows
hannesbecher Apr 2, 2026
b68c5bd
Polish docs from PR #126
gregorgorjanc Apr 6, 2026
7c348fd
Ignoring jarl warnings for internal functions in docs
gregorgorjanc Apr 6, 2026
e61b5d5
Consolidate add_row methods and other polish
gregorgorjanc Apr 8, 2026
4098ddb
Merge branch 'main' into add_sites_mutations
gregorgorjanc Apr 8, 2026
dd64616
More unit tests
gregorgorjanc Apr 8, 2026
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5 changes: 5 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -10,12 +10,17 @@ README_files/
RcppTskit/**/.quarto/
RcppTskit/cran-comments.html
RcppTskit/cran-comments_files/
RcppTskit/covr/
RcppTskit/inst/doc
RcppTskit/src/*.gcda
RcppTskit/src/*.gcno
RcppTskit/src/*.dll*
RcppTskit/src/*.o
RcppTskit/src/*.so
RcppTskit/src/Makevars
RcppTskit/src/Makevars.win
RcppTskit/src/**/*.gcda
RcppTskit/src/**/*.gcno
RcppTskit/src/tskit/*.o
RcppTskit/vignettes/*.R
RcppTskit/vignettes/*.html
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3 changes: 3 additions & 0 deletions RcppTskit/.Rbuildignore
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Expand Up @@ -13,12 +13,15 @@
^cran-comments\.html$
^cran-comments\.md$
^cran-comments_files$
^covr$
^inst/examples/create_test\.trees\.R$
^inst/examples/create_test\.trees\.py$
^inst/examples/explore_reticulate\.R$
^inst/examples/explore_slendr\.R$
^notes_pkg_dev\.Rmd$
^pkg_dev_notes\.md$
^src/.*\.gcda$
^src/.*\.gcno$
^test\.trees$
^tests/testthat/_snaps$
^tools/clang-tidy\.py$
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11 changes: 8 additions & 3 deletions RcppTskit/NEWS.md
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Expand Up @@ -4,7 +4,7 @@ All notable changes to `RcppTskit` are documented in this file.
The file format is based on [Keep a Changelog](https://keepachangelog.com),
and releases adhere to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [0.3.0] 2026-03-02
## [0.3.0] 2026-04-07 (not yet released)

### Added (new features)

Expand Down Expand Up @@ -35,6 +35,11 @@ and releases adhere to [Semantic Versioning](https://semver.org/spec/v2.0.0.html
to append node rows from \code{R}, mirroring `tsk_node_table_add_row()`.
- Added `rtsk_edge_table_add_row()` and `TableCollection$edge_table_add_row()`
to append edge rows from \code{R}, mirroring `tsk_edge_table_add_row()`.
- Added `rtsk_site_table_add_row()` and `TableCollection$site_table_add_row()`
to append site rows from \code{R}, mirroring `tsk_site_table_add_row()`.
- Added `rtsk_mutation_table_add_row()` and
`TableCollection$mutation_table_add_row()` to append mutation rows from
\code{R}, mirroring `tsk_mutation_table_add_row()`.
- TODO

### Changed
Expand All @@ -56,8 +61,8 @@ and releases adhere to [Semantic Versioning](https://semver.org/spec/v2.0.0.html
### Maintenance

- Turn vignette URL as hyperlinks and similar cosmetics.
- State mirroring of the `R/Python` APIs and `C++/C` APIs across the package.
- Update tskit C to 1.3.1
- State that we mirror the `R/Python` APIs and `C++/C` APIs across the package.
- Update `tskit C` to 1.3.1
- TODO

## [0.2.0] - 2026-02-22
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