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welch-lab

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  1. liger liger Public

    R package for integrating and analyzing multiple single-cell datasets

    R 424 82

  2. MultiVelo MultiVelo Public

    Multi-omic velocity inference

    Python 116 11

  3. PerturbNet PerturbNet Public

    PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

    Jupyter Notebook 61 14

  4. VeloVAE VeloVAE Public

    Deep Generative Modeling of RNA Velocity

    Jupyter Notebook 37 8

  5. pyliger pyliger Public

    Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)

    Jupyter Notebook 30 8

  6. cytosignal cytosignal Public

    R 23 1

Repositories

Showing 10 of 32 repositories
  • McCells Public
    welch-lab/McCells’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Feb 19, 2026
  • liger Public

    R package for integrating and analyzing multiple single-cell datasets

    welch-lab/liger’s past year of commit activity
    R 424 GPL-3.0 82 34 (2 issues need help) 11 Updated Feb 4, 2026
  • cytosignal Public
    welch-lab/cytosignal’s past year of commit activity
    R 23 1 6 0 Updated Jan 21, 2026
  • SquiggleNet Public
    welch-lab/SquiggleNet’s past year of commit activity
    Python 22 MIT 6 2 0 Updated Jan 18, 2026
  • libplanc Public Forked from ramkikannan/planc

    Distributed NMF/NTF Library

    welch-lab/libplanc’s past year of commit activity
    C++ 3 22 1 0 Updated Jan 12, 2026
  • PerturbNet Public

    PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

    welch-lab/PerturbNet’s past year of commit activity
    Jupyter Notebook 61 GPL-3.0 14 2 1 Updated Jan 12, 2026
  • welch-lab.github.io Public Forked from vittala23/welchlab

    Welch Lab

    welch-lab/welch-lab.github.io’s past year of commit activity
    HTML 1 1,320 0 2 Updated Nov 26, 2025
  • MultiVeloVAE Public
    welch-lab/MultiVeloVAE’s past year of commit activity
    Jupyter Notebook 4 BSD-3-Clause 0 0 0 Updated Nov 14, 2025
  • AF2_scRNA Public
    welch-lab/AF2_scRNA’s past year of commit activity
    Jupyter Notebook 5 1 0 0 Updated Nov 3, 2025
  • VeloVAE Public

    Deep Generative Modeling of RNA Velocity

    welch-lab/VeloVAE’s past year of commit activity
    Jupyter Notebook 37 BSD-3-Clause 8 8 1 Updated Oct 21, 2025

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