Convenience functions, minor changes

.gitignore

@@ -153,4 +153,6 @@ lite/jupyterlite-icortex/style/icortex.png
 lite/jupyterlite-icortex/LICENSE
 node_modules/
 *.tsbuildinfo
-*_backup
+*_backup
+misc/
+/icortex.toml

.pre-commit-config.yaml

@@ -0,0 +1,10 @@
+repos:
+  - repo: https://github.com/psf/black
+    rev: 22.10.0
+    hooks:
+      - id: black
+        # It is recommended to specify the latest version of Python
+        # supported by your project here, or alternatively use
+        # pre-commit's default_language_version, see
+        # https://pre-commit.com/#top_level-default_language_version
+        language_version: python3.10

icortex/context.py

@@ -284,11 +284,14 @@ def from_file(path: str, scope: t.Dict[str, t.Any] = None):
             raise FileNotFoundError(f"File {path} does not exist")
 
         with open(path, "r") as f:
-            dict_ = json.load(f)
+            context_dict = json.load(f)
 
+        return ICortexContext.from_dict(context_dict, scope)
+
+    def from_dict(context_dict: t.Dict[str, t.Any], scope: t.Dict[str, t.Any] = None):
         ret = ICortexContext(scope=scope)
 
-        for cell_dict in dict_["cells"]:
+        for cell_dict in context_dict["cells"]:
             if cell_dict["metadata"]["source_type"] == "code":
                 cell = CodeCell.from_dict(cell_dict)
             elif cell_dict["metadata"]["source_type"] == "var":
@@ -301,7 +304,7 @@ def from_file(path: str, scope: t.Dict[str, t.Any] = None):
                 )
             ret._cells.append(cell)
 
-        ret._vars = [Var.from_dict(v) for v in dict_["metadata"]["variables"]]
+        ret._vars = [Var.from_dict(v) for v in context_dict["metadata"]["variables"]]
 
         return ret
 
@@ -333,33 +336,32 @@ def run(self, notebook_args: t.List[str]):
                 # Execute the returned code
                 exec(code, scope)
 
-    def bake(self, dest_path: str, format=True):
-        """Bake the notebook to a Python script"""
+    def get_code(self, argparsify=False):
+        """Aggregates the code for the notebook"""
 
-        # Warn if the extension is not .py
-        if not dest_path.endswith(".py"):
-            print(
-                f"Warning: {dest_path} does not have the .py extension. "
-                "It is recommended that you use the .py extension for "
-                "frozen files."
-            )
+        output = ""
+        if argparsify:
+            # scope = locals()
+            vars = self.vars
 
-        vars = self.vars
-        scope = locals()
-
-        output = "import argparse\n\nparser = argparse.ArgumentParser()\n"
-        for var in vars:
-            output += f"parser.add_argument({var.arg!r}, type={var._type.__name__})\n"
-        output += "args = parser.parse_args()\n\n"
+            output += "import argparse\n\nparser = argparse.ArgumentParser()\n"
+            for var in vars:
+                output += (
+                    f"parser.add_argument({var.arg!r}, type={var._type.__name__})\n"
+                )
+            output += "args = parser.parse_args()\n\n"
 
         for cell in self.iter_cells():
             if cell.success:
                 if isinstance(cell, VarCell):
                     var = cell.var
                     # Change the value to that of the parsed argument
                     # var.value = var._type(getattr(parsed_args, var.arg))
-                    code = f"{var.name} = args.{var.arg}\n\n"
-                    # code = var.get_code()
+                    if argparsify:
+                        code = f"{var.name} = args.{var.arg}\n\n"
+                    else:
+                        code = var.get_code()
+
                 elif isinstance(cell, CodeCell):
                     if not is_magic(cell.get_code()):
                         code = cell.get_code().rstrip() + "\n\n"
@@ -371,9 +373,25 @@ def bake(self, dest_path: str, format=True):
                 # Execute the returned code
                 output += code
 
+        return output
+
+    def bake(self, dest_path: str, format=True):
+        """Bake the notebook to a Python script"""
+
+        # Warn if the extension is not .py
+        if not dest_path.endswith(".py"):
+            print(
+                f"Warning: {dest_path} does not have the .py extension. "
+                "It is recommended that you use the .py extension for "
+                "frozen files."
+            )
+
+        output = self.get_code(argparsify=True)
+
         # Run black over output
         if format:
             import black
+
             try:
                 output = black.format_str(output, mode=black.FileMode())
             except:

icortex/init.py

@@ -12,4 +12,4 @@
     ICortexShell._init_icortex_shell(__main__.get_ipython())
     # load_ipython_extension(get_ipython())
 else:
-    raise Exception("IPython is not available, cannot initialize ICortex.")
+    raise Exception("IPython is not available, cannot initialize ICortex.")

icortex/services/echo.py

@@ -5,6 +5,7 @@
 from icortex.helper import escape_quotes
 from icortex.services.generation_result import GenerationResult
 
+
 class EchoService(ServiceBase):
     name = "echo"
     description = "Service used for testing"

icortex/services/service_base.py

@@ -17,6 +17,7 @@
 from icortex.services.service_interaction import ServiceInteraction
 from icortex.parser import lex_prompt
 
+
 def is_str_repr(s: str):
     quotes = ["'", '"']
     return len(s) >= 2 and s[0] in quotes and s[-1] in quotes
@@ -159,9 +160,7 @@ def __init__(self, **kwargs: t.Dict[str, t.Any]):
             required=DEFAULT_AUTO_INSTALL_PACKAGES,
             help="Auto-install packages that are imported in the generated code but missing in the active Python environment.",
         )
-        self.prompt_parser.usage = (
-            "%%prompt your prompt goes here [-e] [-r] [-p] ..."
-        )
+        self.prompt_parser.usage = "%%prompt your prompt goes here [-e] [-r] [-p] ..."
 
         self.prompt_parser.description = self.description
 

icortex/services/textcortex.py

@@ -26,9 +26,9 @@
 
 # Load alternative URI from the environment
 try:
-    from dotenv import load_dotenv
+    from dotenv import load_dotenv, find_dotenv
 
-    load_dotenv()
+    load_dotenv(find_dotenv(usecwd=True))
     ICORTEX_ENDPOINT_URI = os.environ.get("ICORTEX_ENDPOINT_URI", ICORTEX_ENDPOINT_URI)
 except:
     pass

icortex/var.py

@@ -16,6 +16,7 @@
     # "set": set,
 }
 
+
 class Var:
     def __init__(self, arg, name, value, type, description=None):
         self.arg = arg