Changing adapter matching so that self-overlapping patterns are only matched once per read#71

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andrewdavidsmith merged 2 commits intomasterfrom

self-overlapping-adapter-contaminant-fix

Sep 18, 2024

Commits on Sep 18, 2024

src/StreamReader.hpp and src/StreamReader.cpp: added a bitset with entries corresponding to the adapter sequences to act as indicator for adaptor found or not. This is needed for adapters that are …
andrewdavidsmith
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test/md5sum.txt: updating the md5sum.txt file with hashes for files after fixing the multiple matching adapters
andrewdavidsmith
committed