gbifrb

gbifrb is a low level client for the GBIF API

Other GBIF API clients:

• Python: pygbif
• R: rgbif
• PHP: php-gbif

Changes

For changes see the Changelog

API

Methods in relation to GBIF API routes

registry

• /node - Gbif::Registry.nodes
• /network - Gbif::Registry.networks
• /installations - Gbif::Registry.installations
• /organizations - Gbif::Registry.organizations
• /dataset_metrics - Gbif::Registry.dataset_metrics
• /datasets - Gbif::Registry.datasets
• /dataset_suggest - Gbif::Registry.dataset_suggest
• /dataset_search - Gbif::Registry.dataset_search

species

• /species/match - Gbif::Species.name_backbone
• /species/suggest - Gbif::Species.name_suggest
• /species/search - Gbif::Species.name_lookup
• /species - Gbif::Species.name_usage

occurrences

• /search - Gbif::Occurrences.search
• /get - Gbif::Occurrences.get
• /get_verbatim - Gbif::Occurrences.get_verbatim
• /get_fragment - Gbif::Occurrences.get_fragment

Install

Release version

gem install gbifrb

Development version

git clone [email protected]:sckott/gbifrb.git
cd gbifrb
rake install

Examples, in Ruby repl

Registry module

Nodes

require 'gbifrb'
registry = Gbif::Registry
registry.nodes(limit: 5)

Networks

registry.networks(uuid: '16ab5405-6c94-4189-ac71-16ca3b753df7')

Species module

GBIF backbone

species = Gbif::Species
species.name_backbone(name: "Helianthus")

Suggester

species.name_suggest(q: "Helianthus")

Lookup

species.name_lookup(q: "Helianthus")

Lookup example with more parameters: name usages of plants where accepted scientific name includes 'reptans':

species.name_lookup(q: 'reptans', higherTaxonKey: 6, nameType: 'SCIENTIFIC', status: 'ACCEPTED')

Name usage (/species)

species.name_usage(name: "Helianthus")

Name usage example with more parameters: name usages of 'Andropogon' in Database of Vascular Plants of Canada (VASCAN) checklist:

species.name_usage(name: 'Andropogon', datasetKey: '3f8a1297-3259-4700-91fc-acc4170b27ce')

Occurrences

occ = Gbif::Occurrences
occ.search(taxonKey: 3329049)
occ.search(taxonKey: 3329049, limit: 2)
occ.search(scientificName: 'Ursus americanus')

curl options

species = Gbif::Species
species.name_backbone("Helianthus", verbose: true)

Todo

• CLI interface
• occurrence metrics methods
• occurrence downloads methods
• OAI-PMH interface

Meta

• Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.
• License: MIT