AutoManual

This repo is archived as it is not used anymore. This repo was created for the "UKB Main Phase" project which has now completed.

This script will automatically perform a manual QC on the required runs.

Requirements

• python 3.8
• pipenv

Running

The following config is required for this script, place these in a .env file before continuing:

MLWH_DB_USER=
MLWH_DB_PASSWORD=
MLWH_DB_HOST=
MLWH_DB_PORT=
MLWH_DB_DBNAME=
SS_DB_USER=
SS_DB_PASSWORD=
SS_DB_HOST=
SS_DB_PORT=
SS_DB_DBNAME=
SS_URL_HOST=

Using pipenv

This project uses pipenv to manage the evironment and python packages:

1. To craete the virtual environment run pipenv shell
2. Once in the virtual environment, run pipenv install
3. To run the script, python main.py