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@pangenome

pangenome

graphical pangenomic methods

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  1. pggb pggb Public

    the pangenome graph builder

    Shell 476 46

  2. odgi odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    C++ 232 43

  3. impg impg Public

    implicit pangenome graph

    Rust 87 10

  4. smoothxg smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    C++ 60 8

Repositories

Showing 10 of 81 repositories
  • impg Public

    implicit pangenome graph

    pangenome/impg’s past year of commit activity
    Rust 87 MIT 10 0 2 Updated Feb 3, 2026
  • povu Public

    A toolkit for exploring regions of variation in pangenomes

    pangenome/povu’s past year of commit activity
    C++ 13 MIT 3 2 2 Updated Jan 30, 2026
  • HPRCv2 Public

    pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2

    pangenome/HPRCv2’s past year of commit activity
    R 16 MIT 1 0 1 Updated Jan 29, 2026
  • gafpack Public

    convert variation graph alignments to coverage maps over nodes

    pangenome/gafpack’s past year of commit activity
    Rust 27 MIT 2 0 0 Updated Jan 21, 2026
  • sweepga Public

    plane sweep filtering genome alignments

    pangenome/sweepga’s past year of commit activity
    Rust 16 MIT 1 1 1 Updated Jan 20, 2026
  • seqwish Public

    alignment to variation graph inducer

    pangenome/seqwish’s past year of commit activity
    C++ 156 MIT 20 32 4 Updated Jan 20, 2026
  • fastga-rs Public

    fastga rust library

    pangenome/fastga-rs’s past year of commit activity
    Rust 1 MIT 1 1 1 Updated Jan 14, 2026
  • onecode-rs Public

    Rust bindings for ONEcode - a data representation format for genomic data

    pangenome/onecode-rs’s past year of commit activity
    C 0 MIT 0 0 0 Updated Jan 14, 2026
  • allwave Public

    simple interface for all-way alignment with biWFA

    pangenome/allwave’s past year of commit activity
    Rust 2 MIT 0 0 10 Updated Jan 5, 2026
  • odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    pangenome/odgi’s past year of commit activity
    C++ 232 MIT 43 55 (1 issue needs help) 5 Updated Jan 3, 2026
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