Linked data Modeling Language

All

51 repositories

linkml-reference-validator
Public
Validate that supporting text quotes in your data actually appear in their cited references
pubmed monarchinitiative linkml agentic-ai ai-guardrails ai4curation
Python
•
Apache License 2.0
•0•10•0•4•Updated Jan 8, 2026Jan 8, 2026
linkml-term-validator
Public
Validating LinkML schemas and datasets that depend on external terms
validation ontologies obofoundry linkml
Python
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Apache License 2.0
•0•5•3•5•Updated Jan 8, 2026Jan 8, 2026
linkml
Public
Linked Open Data Modeling Language
schema linked-data json-schema rdf modeling semantic-web owl standards data-modeling hacktoberfest
Python
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Apache License 2.0
•142•440•623•48•Updated Jan 8, 2026Jan 8, 2026
linkml-owl
Public
Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)
templates design-patterns owl ontologies ontology-generation ontology-design-patterns metaclasses linkml json2owl yaml2owl
Python
•2•16•13•0•Updated Jan 8, 2026Jan 8, 2026
linkml-map
Public
Mapping between LinkML schemas
etl mapping monarchinitiative linkml data-model-mapping ai4curation
Python
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Other
•3•28•13•3•Updated Jan 7, 2026Jan 7, 2026
dm-bip
Public
Data Model Based Ingestion Pipeline
Jupyter Notebook
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MIT License
•0•12•42•0•Updated Jan 7, 2026Jan 7, 2026
linkml-registry
Public
Registry of schemas that use LinkML
registry schema-registry schemas linkml
Python
•5•14•1•1•Updated Jan 5, 2026Jan 5, 2026
linkml-project-copier
Public
A copier template for your next LinkML project
template schema copier monarchinitiative linkml ai4curation
Jinja
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MIT License
•7•6•13•0•Updated Jan 1, 2026Jan 1, 2026
valuesets
Public
Common value sets (enums) for science, biomedicine, computing, and other areas
semantics standards monarchinitiative fair-data linkml value-sets ai4curation
Python
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Apache License 2.0
•0•10•5•8•Updated Dec 23, 2025Dec 23, 2025
linkml-store
Public
wrapper for multiple linkml storage engines
mongo mongodb rdf data-lake hdf5 nosql-database triplestore database-wrapper data-stack semweb
Python
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MIT License
•3•23•2•2•Updated Dec 22, 2025Dec 22, 2025
linkml-browser
Public
javascript python static-site-generator user-interface linkml
HTML
•0•4•0•5•Updated Dec 16, 2025Dec 16, 2025
schema-automator
Public
Automated assistance for the schema development lifecycle
python tools linked-data owl spreadsheets data-modeling schema-inference csvs linkml incatools
Python
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BSD 3-Clause "New" or "Revised" License
•23•53•41•3•Updated Dec 12, 2025Dec 12, 2025
linkml.github.io
Public
Website/splash page for main LinkML project
jekyll website data-modeling splash-page linkml
HTML
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MIT License
•5•1•0•0•Updated Dec 12, 2025Dec 12, 2025
linkml-runtime
Public
Runtime support for linkml generated models
python conversion hacktoberfest object-model instances linkml linkml-runtime
Python
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Creative Commons Zero v1.0 Universal
•34•41•1•24•Updated Dec 10, 2025Dec 10, 2025
linkml-model
Public
Link Modeling Language (LinkML) model
yaml metadata json linked-data json-schema uml semantic-web metamodel schema-language data-integration
Python
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Creative Commons Zero v1.0 Universal
•22•60•2•18•Updated Dec 9, 2025Dec 9, 2025
linkml-data-qc
Public
A compliance analysis tool for LinkML data files
data-engineering fair-data data-qc linkml
Python
•
Apache License 2.0
•0•3•0•0•Updated Dec 8, 2025Dec 8, 2025
linkml-tutorial-2024
Public archive
Python
•
MIT License
•0•1•0•0•Updated Nov 5, 2025Nov 5, 2025
linkml-tutorial-2025
Public
Jupyter Notebook
•
MIT License
•0•0•0•5•Updated Nov 5, 2025Nov 5, 2025
prefixmaps
Public
Semantic prefix map registry
obofoundry bioregistry linkml prefixmaps
Python
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Apache License 2.0
•3•13•11•0•Updated Oct 31, 2025Oct 31, 2025
linkml-project-cookiecutter
Public archive
A cookiecutter for linkml projects. An equivalent of `linkml-ws new project-name`.
Python
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Creative Commons Zero v1.0 Universal
•19•27•19•0•Updated Oct 23, 2025Oct 23, 2025
linkml-solr
Public
Simple wrapper for using Solr with LinkML schemas
metadata solr linkml
Python
•1•5•1•0•Updated Sep 11, 2025Sep 11, 2025
cmdr
Public
Python
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MIT License
•0•6•3•0•Updated Aug 9, 2025Aug 9, 2025
schemasheets
Public
Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
metadata schemas spreadsheets shex shacl fair-data linkml shape-languages sheets2linkml
Python
•5•49•30•0•Updated May 1, 2025May 1, 2025
linkml-arrays
Public
Support for loading and dumping N-dimensional arrays in LinkML.
linked-data numpy arrays multidimensional-arrays zarr linkml hdmf
Python
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BSD 3-Clause "New" or "Revised" License
•1•6•7•4•Updated Jan 18, 2025Jan 18, 2025
linkml-arrays-paper
Public
Perspective Paper on LinkML Arrays
TeX
•0•0•12•0•Updated Nov 14, 2024Nov 14, 2024
linkml-common
Public
ALPHA common modeling patterns
schema-org common-data-model linkml
Python
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MIT License
•0•6•0•0•Updated Sep 16, 2024Sep 16, 2024
linkml-tutorial
Public
tutorial linkml
Python
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MIT License
•1•8•0•0•Updated Aug 13, 2024Aug 13, 2024
linkml-schemaorg
Public
Automated linkml rendering of schema.org
schema-org linkml
Makefile
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MIT License
•1•6•3•0•Updated Jul 24, 2024Jul 24, 2024
linkml-renderer
Public
Rendering of instance data as HTML, Markdown, Mermaid
python html markdown templates mermaid linkml instance-graphs
Python
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Apache License 2.0
•0•7•2•0•Updated Jun 26, 2024Jun 26, 2024
linkml-dataops
Public
Data API for LinkML instance data
python api database query-language data-modeling linkml change-objects
Python
•1•5•1•0•Updated Feb 27, 2024Feb 27, 2024