Repositories list

• datasets_harmonization

  Public
  Harmonization of DNA methylation datasets

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 4, 2026Feb 4, 2026

• ad-cr

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  AD CR Analysis

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 18, 2026Jan 18, 2026

• multiRF-vs

  Public
  Code for multi-omics random forest variable selection

  HTML

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  GNU General Public License v3.0

  •11 fork•11 star•00 issues•00 pull requests•Updated Aug 25, 2025Aug 25, 2025

• DNAm-and-LE8

  Public
  AD CR Nomas

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 15, 2025Jul 15, 2025

• AD-Aging-blood-sample-analysis

  Public
  Code for The Aging Epigenome: Integrative Analyses Reveal Functional and Genetic Links to Alzheimer’s Disease

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 5, 2025Jun 5, 2025

• blood-dnam-and-incident-dementia

  Public
  Blood DNA Methylation Signature for Incident Dementia: Evidence from Longitudinal Cohorts

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  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2025Apr 7, 2025

• MIAMI.AD

  Public
  A repository of the code for the MIAMI-AD shiny server.

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  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 25, 2025Feb 25, 2025

• AD-aging-brain-samples-analysis

  Public
  R

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 12, 2025Feb 12, 2025

• Organoid-Prediction

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  Code for Colorectal Tumor Organoid Network Analysis and Prediction

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  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 25, 2024Nov 25, 2024

• DNAm-and-RI

  Public
  DNA Methylation Signature of a Lifestyle-based Resilience Index for Cognitive Health

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  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 23, 2024Oct 23, 2024

• coMethDMR

  Public
  Detect Regions of Concurrent Differential Methylation

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  •22 forks•77 stars•1212 issues•00 pull requests•Updated Oct 3, 2024Oct 3, 2024

• coMethDMR_data

  Public
  R

  •00 forks•00 stars•11 issue•00 pull requests•Updated Oct 2, 2024Oct 2, 2024

• TNBC-meta-analysis

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  Code for TNBC meta-analysis

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  •22 forks•11 star•00 issues•00 pull requests•Updated Aug 6, 2024Aug 6, 2024

• ranktreeEnsemble

  Public
  R

  •22 forks•11 star•00 issues•00 pull requests•Updated May 24, 2024May 24, 2024

• ad-meta-analysis

  Public
  R

  •22 forks•88 stars•00 issues•00 pull requests•Updated Apr 29, 2024Apr 29, 2024

• DNAm-reliability

  Public
  Critical evaluation of the reliability of DNA methylation probes on the Illumina MethylationEPIC BeadChip microarrays for dementia research

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  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 3, 2024Apr 3, 2024

• MethReg

  Public
  An R package to assess the regulatory potential of DNA methylation regions or sites on gene transcription

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  Other

  •22 forks•55 stars•55 issues•00 pull requests•Updated Jan 25, 2024Jan 25, 2024

• HIH

  Public
  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 26, 2023Apr 26, 2023

• LRinteractions

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 26, 2023Apr 26, 2023

• AD-ATN-biomarkers-and-DNAm

  Public
  Distinct CSF biomarker-associated DNA methylation in Alzheimer's disease and cognitively normal subjects

  R

  •11 fork•11 star•00 issues•00 pull requests•Updated Mar 25, 2023Mar 25, 2023

• rnaEditr

  Public
  R

  •11 fork•33 stars•11 issue•00 pull requests•Updated Nov 24, 2022Nov 24, 2022

• AD-meta-analysis-blood-by-sex

  Public
  Distinct sex-specific DNA methylation differences in Alzheimer’s disease

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  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 23, 2022Aug 23, 2022

• coMethDMR_BioC2022

  Public
  coMethDMR Workshop for BioC2022 in Seattle, WA

  HTML

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  GNU General Public License v3.0

  •33 forks•22 stars•00 issues•00 pull requests•Updated Jul 27, 2022Jul 27, 2022

• AD-meta-analysis-blood

  Public
  AD meta analysis blood

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  •22 forks•11 star•00 issues•00 pull requests•Updated Jul 4, 2022Jul 4, 2022

• TNBC_analysis

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  Code to reproduce TNBC analysis and figures

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  •1010 forks•2424 stars•11 issue•00 pull requests•Updated Jun 13, 2022Jun 13, 2022

• hidRF

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 16, 2022Mar 16, 2022

• ad-meta-analysis-by-sex

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  A sex specific meta analysis for AD

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  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 28, 2022Jan 28, 2022

• pathwayMultiomics

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  An R Package to Implement the Pathway-Based MiniMax Statistic for Multi-Omics Analysis

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  •22 forks•66 stars•22 issues•00 pull requests•Updated Nov 22, 2021Nov 22, 2021

• pathwayMultiomics_manuscript_supplement

  Public
  Repository for supplemental material of the pathwayPCA MultiOmics manuscript

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  •33 forks•00 stars•00 issues•00 pull requests•Updated Nov 12, 2021Nov 12, 2021

• MethReg_supplemental

  Public
  Code used in MethReg article

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  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 13, 2021Aug 13, 2021