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Centrifuger centrifuger#11181

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haris18s wants to merge 2 commits intonf-core:masterfrom
haris18s:centrifuger_centrifuger
Open

Centrifuger centrifuger#11181
haris18s wants to merge 2 commits intonf-core:masterfrom
haris18s:centrifuger_centrifuger

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@haris18s
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PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity:
    • For modules:
      • nf-core modules test centrifuger/centrifuger --profile docker
      • nf-core modules test centrifuger/centrifuger --profile singularity
      • nf-core modules test centrifuger/centrifuger --profile conda

Description

Classificion model for Centrifguer modules

Module details

  • Tool: Centrifuger v1.1.0
  • Inputs: Single-end or paired-end FASTQ reads + Centrifuger database (.cfr files)
  • !! Tests could not be fully validated locally due to Apple Silicon (ARM) architecture limitations . The test database (.cfr files) may need to be rebuilt on a native x86 machine .

@haris18s haris18s requested review from a team as code owners April 14, 2026 13:02
Comment thread .vscode/settings.json Outdated
@haris18s haris18s force-pushed the centrifuger_centrifuger branch 4 times, most recently from de98ca6 to af0fc61 Compare April 16, 2026 14:18
@jfy133
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jfy133 commented Apr 16, 2026

@nf-core-bot fix linting

@mashehu mashehu force-pushed the centrifuger_centrifuger branch from d13ee7f to cc86b31 Compare April 16, 2026 18:43
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4 participants