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nf-core / chipseq Public

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Fork 176
Star 235

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Issues 37
Pull requests 6
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Some fixes#339

Merged

JoseEspinosa merged 24 commits intonf-core:devnf-core/chipseq:devfrom

JoseEspinosa:fixesJoseEspinosa/nf-core-chipseq:fixesCopy head branch name to clipboard

Apr 18, 2023

Conversation Commits24 (24)Checks Files changed

Merged

Some fixes#339
JoseEspinosa merged 24 commits intonf-core:devfrom
JoseEspinosa:fixes

Commits

Commits on Apr 17, 2023

Add back skip_spp parameter
JoseEspinosa
committed
Install fastq_fastqc_umitools_trimgalore subworkflow
JoseEspinosa
committed
Install fastq_align_bwa subworkflow
JoseEspinosa
committed
Install fastq_align_bowtie2 subworkflow
JoseEspinosa
committed
Install fastq_align_chromap subworkflow
JoseEspinosa
committed
use the FASTQ_FASTQC_UMITOOLS_TRIMGALORE subworkflow insead of fastq_trimgalore
JoseEspinosa
committed
Use FASTQ_ALIGN_BWA subworkflow
JoseEspinosa
committed

Commits on Apr 18, 2023

Use FASTQ_ALIGN_BOWTIE2 subworkflow
JoseEspinosa
committed
Install custom/getchromsizes and picard/collectmultiplemetrics
JoseEspinosa
committed
Remove substituted modules and subworkflows
JoseEspinosa
committed
Rename bamtools/filter
JoseEspinosa
committed
add align_star local subworkflow
JoseEspinosa
committed
Refactor and rename bam_filter_bamtools
JoseEspinosa
committed
Refactor code to use nf-core official subworkflows
JoseEspinosa
committed
Simplify code
JoseEspinosa
committed
changelog
JoseEspinosa
committed
Resolved arguments for bamtools_filteer
JoseEspinosa
committed
Update bowtie2/align to fix the container download
JoseEspinosa
committed
Remove code used for view
JoseEspinosa
committed
Feed missing arguments to star subworkflow
JoseEspinosa
committed
Update chromap/chromap
JoseEspinosa
committed
Update star_align
JoseEspinosa
committed
Update changelog
JoseEspinosa
committed
Update bowtie2/build
JoseEspinosa
committed

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