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@nanoporetech

Oxford Nanopore Technologies

Direct DNA/RNA analysis for anyone, anywhere.

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  1. dorado dorado Public

    Oxford Nanopore's Basecaller

    C++ 796 109

  2. medaka medaka Public

    Sequence correction provided by ONT Research

    Python 500 86

  3. pod5-file-format pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    C++ 171 36

  4. bonito bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python 428 134

  5. modkit modkit Public

    A bioinformatics tool for working with modified bases

    Rust 247 23

  6. fast-ctc-decode fast-ctc-decode Public

    Blitzing Fast CTC Beam Search Decoder

    Rust 185 28

Repositories

Showing 10 of 91 repositories
  • ts-argue Public
    nanoporetech/ts-argue’s past year of commit activity
    TypeScript 1 MPL-2.0 0 2 (1 issue needs help) 3 Updated Feb 12, 2026
  • ont-minimap2 Public

    Cross platform builds for minimap2

    nanoporetech/ont-minimap2’s past year of commit activity
    CMake 7 3 0 0 Updated Feb 11, 2026
  • hatch-protobuf Public

    Hatch plugin for generating Python files from Protocol Buffers .proto files

    nanoporetech/hatch-protobuf’s past year of commit activity
    Python 14 6 2 2 Updated Jan 19, 2026
  • modkit Public

    A bioinformatics tool for working with modified bases

    nanoporetech/modkit’s past year of commit activity
    Rust 247 23 258 2 Updated Jan 19, 2026
  • ont-output-specifications Public

    Specifications for output files from MinKNOW, dorado and others

    nanoporetech/ont-output-specifications’s past year of commit activity
    Python 5 0 0 0 Updated Jan 16, 2026
  • bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    nanoporetech/bonito’s past year of commit activity
    Python 428 134 3 4 Updated Jan 14, 2026
  • dorado Public

    Oxford Nanopore's Basecaller

    nanoporetech/dorado’s past year of commit activity
    C++ 796 109 91 (1 issue needs help) 2 Updated Jan 13, 2026
  • medaka Public

    Sequence correction provided by ONT Research

    nanoporetech/medaka’s past year of commit activity
    Python 500 86 31 3 Updated Dec 8, 2025
  • pyspoa Public

    Python bindings to spoa

    nanoporetech/pyspoa’s past year of commit activity
    Python 22 4 3 0 Updated Dec 3, 2025
  • pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    nanoporetech/pod5-file-format’s past year of commit activity
    C++ 171 36 47 3 Updated Nov 19, 2025
View all repositories