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Menche Lab

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  1. VRNetzer VRNetzer Public

    A Virtual Reality platform for interactive, immersive network exploration.

    39 4

  2. CartoGRAPHs CartoGRAPHs Public

    HTML 24 1

  3. MultiOme MultiOme Public

    Network-based project to explore gene connectivity through biological scales

    HTML 23 5

  4. BioProfiling.jl BioProfiling.jl Public

    A flexible Julia toolkit for high-dimensional cellular profiles

    Julia 13 1

  5. DataDiVR_WebApp DataDiVR_WebApp Public

    JavaScript 11 4

  6. Perturbome Perturbome Public

    Code to reproduce the study: Mapping the perturbome network of cellular perturbations.

    Jupyter Notebook 8 6

Repositories

Showing 10 of 56 repositories
  • DataDiVR_WebApp Public
    menchelab/DataDiVR_WebApp’s past year of commit activity
    JavaScript 11 MIT 4 18 1 Updated Feb 6, 2026
  • EndotypY Public

    package formulation of endotyping pipeline

    menchelab/EndotypY’s past year of commit activity
    Python 0 MIT 1 4 1 Updated Jan 20, 2026
  • gathering_graphrag Public
    menchelab/gathering_graphrag’s past year of commit activity
    Python 0 0 0 0 Updated Jan 19, 2026
  • sctools Public

    Collection of helper functions to make large scale single cell analysis more bearable

    menchelab/sctools’s past year of commit activity
    Python 0 MIT 1 0 1 Updated Jan 16, 2026
  • datadivr Public

    datadivr toolset

    menchelab/datadivr’s past year of commit activity
    Python 0 MIT 2 8 0 Updated Jan 13, 2026
  • apobex Public
    menchelab/apobex’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 16, 2025
  • gathering_reproducibility Public

    A repository for our gathering on reproducibility on the 2nd of December 2025

    menchelab/gathering_reproducibility’s past year of commit activity
    Python 0 1 0 1 Updated Dec 3, 2025
  • Grundtner_et_al_2025 Public

    All the code used for analysis of vagus nerve data with MEFISTO

    menchelab/Grundtner_et_al_2025’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 7, 2025
  • Englmaier_et_al_2025 Public

    A repository for code associated with codonbias analyses presented in the manuscript

    menchelab/Englmaier_et_al_2025’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 27, 2025
  • Exposome Public template

    This repository will contain the analyses for the human exposure network paper

    menchelab/Exposome’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Sep 24, 2025
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