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Co-authored-by: Ben Capodanno <31941502+bencap@users.noreply.github.com>
Co-authored-by: Ben Capodanno <31941502+bencap@users.noreply.github.com>
The current column marks whether the mapped variant is considered the most current mapped version of a given variant in the mapped_variants table. This is necessary because we may store multiple mapped versions of a variant. This commit also adds a default value of "1.3" for the VRS version, since all the mapped variants currently in the database use VRS 1.3, and adds a default value of the date of execution for the modification date, since the modification date should keep track of when the row was last updated.
These columns will store metadata about the hashed ids used to store the target sequence, if applicable, in Seqrepo during mapping, as well as hashed ids that point to the accession id of the target gene or mapped reference in Seqrepo. Also stores human-readable labels for mapped reference sequences.
Debug statistics record score-set and keywords problem.
Logging now requires jobs to be retained, so instead of using the same job id for all mapping jobs, instead track the job id of the currently running mapping job and check whether that job has completed before queueing a new job. Also, add more exception handling to worker mapping job.
Previously used processing state enum for mapping state field, but this caused database constraint issues.
Debug has_permission function.
…t-update-variant-validation-failures Score set update variant validation failures
Release 2024.3.1 as part of Release 2024.4.0
VRS Map Integration
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