982 Make NPI delay implementation a parameter, set it and harmonize model advance functions

[mknaranja]

Changes and Information

Please briefly list the changes (main added features, changed items, or corrected bugs) made:

• Rename delay_lockdown and make it a DynamicNPIsImplementationDelay Parameter
• Harmonize SECIR and SECIRVVS advance functions

If need be, add additional information and what the reviewer should look out for in particular:

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[mknaranja]

@HenrZu @jubicker After I had reseen our delay_lockdown parameter on Thursday I directly made a first suggestion on how to improve it. There might be things missing like sampling, setting etc and tests are missing anyway. Could you have a look and take over?

[codecov]

Codecov Report

Attention: Patch coverage is 99.50980% with 1 line in your changes missing coverage. Please review.

Project coverage is 96.47%. Comparing base (d4ed967) to head (5fcbb7e).
Report is 4 commits behind head on main.

Files with missing lines	Patch %	Lines
cpp/models/ode_secir/model.h	96.29%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #984      +/-   ##
==========================================
+ Coverage   96.44%   96.47%   +0.02%     
==========================================
  Files         135      135              
  Lines       11286    11369      +83     
==========================================
+ Hits        10885    10968      +83     
  Misses        401      401              

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[HenrZu]

@mknaranja @jubicker i have made some changes and added a few tests. Maybe one can verify/ review this further.

[jubicker]

@mknaranja @jubicker i have made some changes and added a few tests. Maybe one can verify/ review this further.

Looks good so far (only had some minor comments). But the merge conflicts should be resolved.