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1351 pymio interface for sde sir type models#1371

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HenrZu merged 14 commits intomainfrom
1351-pymio-interface-for-sde-sir-type-models
Oct 27, 2025
Merged

1351 pymio interface for sde sir type models#1371
HenrZu merged 14 commits intomainfrom
1351-pymio-interface-for-sde-sir-type-models

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@MaxBetzDLR MaxBetzDLR commented Sep 8, 2025

Changes and Information

Please briefly list the changes (main added features, changed items, or corrected bugs) made:

  • Add bindings for sde models (SIR, SIRS)
  • Use simulate_stochastic

If need be, add additional information and what the reviewer should look out for in particular:

Merge Request - Guideline Checklist

Please check our git workflow. Use the draft feature if the Pull Request is not yet ready to review.

Checks by code author

  • Every addressed issue is linked (use the "Closes #ISSUE" keyword below)
  • New code adheres to coding guidelines
  • No large data files have been added (files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.)
  • Tests are added for new functionality and a local test run was successful (with and without OpenMP)
  • Appropriate documentation within the code (Doxygen) for new functionality has been added in the code
  • Appropriate external documentation (ReadTheDocs) for new functionality has been added to the online documentation
  • Proper attention to licenses, especially no new third-party software with conflicting license has been added
  • (For ABM development) Checked benchmark results and ran and posted a local test above from before and after development to ensure performance is monitored.

Checks by code reviewer(s)

  • Corresponding issue(s) is/are linked and addressed
  • Code is clean of development artifacts (no deactivated or commented code lines, no debugging printouts, etc.)
  • Appropriate unit tests have been added, CI passes, code coverage and performance is acceptable (did not decrease)
  • No large data files added in the whole history of commits(files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.)
  • On merge, add 2-5 lines with the changes (main added features, changed items, or corrected bugs) to the merge-commit-message. This can be taken from the briefly-list-the-changes above (best case) or the separate commit messages (worst case).

Closes #1351

@MaxBetzDLR MaxBetzDLR added the loc::python interface This issue concerns the python interface to the backend implementation. label Sep 8, 2025
@MaxBetzDLR MaxBetzDLR linked an issue Sep 8, 2025 that may be closed by this pull request
2 tasks
@MaxBetzDLR MaxBetzDLR added the model::sde This issue concerns any kind of stochastic differential equation-based model. label Sep 8, 2025
@MaxBetzDLR MaxBetzDLR requested a review from jubicker September 8, 2025 14:26
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codecov bot commented Sep 8, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 97.26%. Comparing base (52ed3c1) to head (619f064).
⚠️ Report is 5 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1371      +/-   ##
==========================================
- Coverage   97.27%   97.26%   -0.01%     
==========================================
  Files         175      176       +1     
  Lines       15306    15454     +148     
==========================================
+ Hits        14889    15032     +143     
- Misses        417      422       +5     

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@HenrZu HenrZu requested a review from jubicker October 10, 2025 07:59
@HenrZu HenrZu merged commit aa541c0 into main Oct 27, 2025
57 checks passed
@HenrZu HenrZu deleted the 1351-pymio-interface-for-sde-sir-type-models branch October 27, 2025 13:02
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loc::python interface This issue concerns the python interface to the backend implementation. model::sde This issue concerns any kind of stochastic differential equation-based model.

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PyMio interface for SDE SIR-type models

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