1178 code creation based on standardised formats for ODEs

[kilianvolmer]

Changes and Information

Please briefly list the changes (main added features, changed items, or corrected bugs) made:

• Add memilio2sbml executable
• Add documentation for memilio2sbml executable

If need be, add additional information and what the reviewer should look out for in particular:

Merge Request - Guideline Checklist

Please check our git workflow. Use the draft feature if the Pull Request is not yet ready to review.

Checks by code author

• Every addressed issue is linked (use the "Closes #ISSUE" keyword below)
• New code adheres to coding guidelines
• No large data files have been added (files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.)
• Tests are added for new functionality and a local test run was successful (with and without OpenMP)
• Appropriate documentation for new functionality has been added (Doxygen in the code and Markdown files if necessary)
• Proper attention to licenses, especially no new third-party software with conflicting license has been added
• (For ABM development) Checked benchmark results and ran and posted a local test above from before and after development to ensure performance is monitored.

Checks by code reviewer(s)

• Corresponding issue(s) is/are linked and addressed
• Code is clean of development artifacts (no deactivated or commented code lines, no debugging printouts, etc.)
• Appropriate unit tests have been added, CI passes, code coverage and performance is acceptable (did not decrease)
• No large data files added in the whole history of commits(files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.)
• On merge, add 2-5 lines with the changes (main added features, changed items, or corrected bugs) to the merge-commit-message. This can be taken from the briefly-list-the-changes above (best case) or the separate commit messages (worst case).

Closes #1178

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 97.28%. Comparing base (8b250bd) to head (3bc4283).
Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #1235   +/-   ##
=======================================
  Coverage   97.28%   97.28%           
=======================================
  Files         168      168           
  Lines       14858    14858           
=======================================
  Hits        14454    14454           
  Misses        404      404           

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[HenrZu]

Great addition! i had a first look at it and have some comments. I still need to look into the sbml.h file more in detail and also into the doc.

[reneSchm]

Please merge main again so that the CI can pass, then I think this is good to go.

Note: This new functionality is not covered by unit tests, instead it has its own CI job.