Currently, source metadata is written to the log file with all associated warnings and errors. However, if there is an issue related to metadata obtained during the annotation process (e.g. BridgeDB: hmdbid -> wikidataid in the example below), it is not present.
WARNING: Errors related to metadata:
{'formula': 'H2', 'mw': '2', 'casno': '1333-74-0', 'id': '1', 'comment': 'NIST MS# 245692, Seq# M1', 'num_peaks': '2', 'compound_name': 'Hydrogen'}
-> InvalidAttributeFormat - CIR: casno -> smiles:
Obtained smiles in invalid format: [H]
-> TargetAttributeNotRetrieved - CIR: casno -> smiles:
No data retrieved.
-> TargetAttributeNotRetrieved - BridgeDB: hmdbid -> wikidataid:
No data retrieved.
Currently, source metadata is written to the log file with all associated warnings and errors. However, if there is an issue related to metadata obtained during the annotation process (e.g.
BridgeDB: hmdbid -> wikidataidin the example below), it is not present.