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Merged
sreeder merged 13 commits into from
Nov 14, 2017
Merged

Dsresults #122

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2a22676
update getDatasets and create getDatasetsResults functions
Nov 9, 2017
1ce6c37
add condition to getDatasetREsults function
Nov 9, 2017
4ea9395
fix typo in get from ids
Nov 13, 2017
11b0c36
update Sample.py
Nov 13, 2017
8a8ffe7
update tests, update DateTime data type to be compatible with sqlite,…
Nov 13, 2017
120008d
fix sample.py file
Nov 13, 2017
a88c8ae
accidentally duplicated code
Nov 13, 2017
9624cc5
remvoe unused imports in models.py
Nov 13, 2017
a4febb4
fix issue with getSamplingFeatureDatasets
Nov 13, 2017
9401656
fix issue with sf in datasets
Nov 13, 2017
91ee0c3
undo changes made to test sql query
Nov 13, 2017
f33c2cb
add datasetsvalues docstrings
Nov 13, 2017
644cb6f
update doc strings
Nov 13, 2017
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5 changes: 0 additions & 5 deletions Examples/Sample.py
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Original file line number Diff line number Diff line change
Expand Up @@ -22,22 +22,17 @@

# session_factory= dbconnection.createConnection('mssql', "(local)", "ODM2", "ODM", "odm")#win MSSQL


# session_factory= dbconnection.createConnection('mssql', "arroyoodm2", "", "ODM", "odm")#mac/linux MSSQL
# session_factory = dbconnection.createConnection('sqlite', '/Users/stephanie/DEV/YODA-Tools/tests/test_files/XL_specimen.sqlite', 2.0)





#_session = session_factory.getSession()
read = ReadODM2(session_factory)
create = CreateODM2(session_factory)





# Run some basic sample queries.
# ------------------------------
# Get all of the variables from the database and print their names to the console
Expand Down
56 changes: 29 additions & 27 deletions odm2api/ODM2/models.py
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Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,16 @@
from sqlalchemy import BigInteger, Boolean, Column, Date, DateTime, Float, ForeignKey, Integer, String, case
from sqlalchemy.dialects import mysql, postgresql, sqlite
from sqlalchemy.orm import relationship

Base = modelBase.Base

BigIntegerType = BigInteger()
BigIntegerType = BigIntegerType.with_variant(sqlite.INTEGER(), 'sqlite')
BigIntegerType = BigIntegerType.with_variant(postgresql.BIGINT(), 'postgresql')
BigIntegerType = BigIntegerType.with_variant(mysql.BIGINT(), 'mysql')

DateTimeType = DateTime()
DateTimeType = DateTimeType.with_variant(sqlite.INTEGER(), 'sqlite')


def is_hex(s):
try:
Expand Down Expand Up @@ -404,9 +406,9 @@ class Results(Base):
ProcessingLevelID = Column('processinglevelid', ForeignKey(ProcessingLevels.ProcessingLevelID),
nullable=False)
ResultDateTime = Column('resultdatetime', DateTime)
ResultDateTimeUTCOffset = Column('resultdatetimeutcoffset', BigInteger)
ResultDateTimeUTCOffset = Column('resultdatetimeutcoffset', BigIntegerType)
ValidDateTime = Column('validdatetime', DateTime)
ValidDateTimeUTCOffset = Column('validdatetimeutcoffset', BigInteger)
ValidDateTimeUTCOffset = Column('validdatetimeutcoffset', BigIntegerType)
StatusCV = Column('statuscv', ForeignKey(CVStatus.Name), index=True)
SampledMediumCV = Column('sampledmediumcv', ForeignKey(CVMediumType.Name), nullable=False, index=True)
ValueCount = Column('valuecount', Integer, nullable=False)
Expand Down Expand Up @@ -503,7 +505,7 @@ class InstrumentOutputVariables(Base):
class DataLoggerFileColumns(Base):

DataLoggerFileColumnID = Column('dataloggerfilecolumnid', Integer, primary_key=True, nullable=False)
ResultID = Column('resultid', BigInteger, ForeignKey(Results.ResultID))
ResultID = Column('resultid', BigIntegerType, ForeignKey(Results.ResultID))
DataLoggerFileID = Column('dataloggerfileid', Integer,
ForeignKey(DataLoggerFiles.DataLoggerFileID), nullable=False)
InstrumentOutputVariableID = Column('instrumentoutputvariableid', Integer,
Expand Down Expand Up @@ -861,7 +863,7 @@ class ActionAnnotations(Base):
class EquipmentAnnotations(Base):

BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
EquipmentID = Column('valueid', BigInteger, ForeignKey(Equipment.EquipmentID), nullable=False)
EquipmentID = Column('valueid', BigIntegerType, ForeignKey(Equipment.EquipmentID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)

AnnotationObj = relationship(Annotations)
Expand Down Expand Up @@ -1640,7 +1642,7 @@ class CategoricalResultValues(Base):
ValueID = Column('valueid', BigIntegerType, primary_key=True)
ResultID = Column('resultid', ForeignKey(CategoricalResults.ResultID), nullable=False)
DataValue = Column('datavalue', String(255), nullable=False)
ValueDateTime = Column('valuedatetime', DateTime, nullable=False)
ValueDateTime = Column('valuedatetime', DateTimeType, nullable=False)
ValueDateTimeUTCOffset = Column('valuedatetimeutcoffset', Integer, nullable=False)

ResultObj = relationship(CategoricalResults)
Expand All @@ -1651,7 +1653,7 @@ class MeasurementResultValues(Base):
ValueID = Column('valueid', BigIntegerType, primary_key=True)
ResultID = Column('resultid', ForeignKey(MeasurementResults.ResultID), nullable=False)
DataValue = Column('datavalue', Float(53), nullable=False)
ValueDateTime = Column('valuedatetime', DateTime, nullable=False)
ValueDateTime = Column('valuedatetime', DateTimeType, nullable=False)
ValueDateTimeUTCOffset = Column('valuedatetimeutcoffset', Integer, nullable=False)

ResultObj = relationship(MeasurementResults)
Expand All @@ -1661,8 +1663,8 @@ class PointCoverageResultValues(Base):

ValueID = Column('valueid', BigIntegerType, primary_key=True)
ResultID = Column('resultid', ForeignKey(PointCoverageResults.ResultID), nullable=False)
DataValue = Column('datavalue', BigInteger, nullable=False)
ValueDateTime = Column('valuedatetime', DateTime, nullable=False)
DataValue = Column('datavalue', BigIntegerType, nullable=False)
ValueDateTime = Column('valuedatetime', DateTimeType, nullable=False)
ValueDateTimeUTCOffset = Column('valuedatetimeutcoffset', Integer, nullable=False)
XLocation = Column('xlocation', Float(53), nullable=False)
XLocationUnitsID = Column('xlocationunitsid', ForeignKey(Units.UnitsID), nullable=False)
Expand All @@ -1687,7 +1689,7 @@ class ProfileResultValues(Base):
ValueID = Column('valueid', BigIntegerType, primary_key=True)
ResultID = Column('resultid', ForeignKey(ProfileResults.ResultID), nullable=False)
DataValue = Column('datavalue', Float(53), nullable=False)
ValueDateTime = Column('valuedatetime', DateTime, nullable=False)
ValueDateTime = Column('valuedatetime', DateTimeType, nullable=False)
ValueDateTimeUTCOffset = Column('valuedatetimeutcoffset', Integer, nullable=False)
ZLocation = Column('zlocation', Float(53), nullable=False)
ZAggregationInterval = Column('zaggregationinterval', Float(53), nullable=False)
Expand All @@ -1714,12 +1716,12 @@ class SectionResultValues(Base):
ValueID = Column('valueid', BigIntegerType, primary_key=True)
ResultID = Column('resultid', ForeignKey(SectionResults.ResultID), nullable=False)
DataValue = Column('datavalue', Float(53), nullable=False)
ValueDateTime = Column('valuedatetime', BigInteger, nullable=False)
ValueDateTimeUTCOffset = Column('valuedatetimeutcoffset', BigInteger, nullable=False)
ValueDateTime = Column('valuedatetime', DateTimeType, nullable=False)
ValueDateTimeUTCOffset = Column('valuedatetimeutcoffset', Integer, nullable=False)
XLocation = Column('xlocation', Float(53), nullable=False)
XAggregationInterval = Column('xaggregationinterval', Float(53), nullable=False)
XLocationUnitsID = Column('xlocationunitsid', ForeignKey(Units.UnitsID), nullable=False)
ZLocation = Column('zlocation', BigInteger, nullable=False)
ZLocation = Column('zlocation', BigIntegerType, nullable=False)
ZAggregationInterval = Column('zaggregationinterval', Float(53), nullable=False)
ZLocationUnitsID = Column('zlocationunitsid', ForeignKey(Units.UnitsID), nullable=False)
CensorCodeCV = Column('censorcodecv', ForeignKey(CVCensorCode.Name), nullable=False, index=True)
Expand Down Expand Up @@ -1750,7 +1752,7 @@ class SpectraResultValues(Base):
ValueID = Column('valueid', BigIntegerType, primary_key=True)
ResultID = Column('resultid', ForeignKey(SpectraResults.ResultID), nullable=False)
DataValue = Column('datavalue', Float(53), nullable=False)
ValueDateTime = Column('valuedatetime', DateTime, nullable=False)
ValueDateTime = Column('valuedatetime', DateTimeType, nullable=False)
ValueDateTimeUTCOffset = Column('valuedatetimeutcoffset', Integer, nullable=False)
ExcitationWavelength = Column('excitationwavelength', Float(53), nullable=False)
EmissionWavelength = Column('emmistionwavelength', Float(53), nullable=False)
Expand Down Expand Up @@ -1779,7 +1781,7 @@ class TimeSeriesResultValues(Base):
ValueID = Column('valueid', BigIntegerType, primary_key=True)
ResultID = Column('resultid', ForeignKey(TimeSeriesResults.ResultID), nullable=False)
DataValue = Column('datavalue', Float(53), nullable=False)
ValueDateTime = Column('valuedatetime', DateTime, nullable=False)
ValueDateTime = Column('valuedatetime', DateTimeType, nullable=False)
ValueDateTimeUTCOffset = Column('valuedatetimeutcoffset', Integer, nullable=False)
CensorCodeCV = Column('censorcodecv', ForeignKey(CVCensorCode.Name), nullable=False, index=True)
QualityCodeCV = Column('qualitycodecv', ForeignKey(CVQualityCode.Name), nullable=False, index=True)
Expand All @@ -1805,7 +1807,7 @@ class TrajectoryResultValues(Base):
ValueID = Column('valueid', BigIntegerType, primary_key=True)
ResultID = Column('resultid', ForeignKey(TrajectoryResults.ResultID), nullable=False)
DataValue = Column('datavalue', Float(53), nullable=False)
ValueDateTime = Column('valuedatetime', DateTime, nullable=False)
ValueDateTime = Column('valuedatetime', DateTimeType, nullable=False)
ValueDateTimeUTCOffset = Column('valuedatetimeutcoffset', Integer, nullable=False)
XLocation = Column('xlocation', Float(53), nullable=False)
XLocationUnitsID = Column('xlocationunitsid', ForeignKey(Units.UnitsID), nullable=False)
Expand Down Expand Up @@ -1850,8 +1852,8 @@ class TransectResultValues(Base):
ValueID = Column('valueid', BigIntegerType, primary_key=True)
ResultID = Column('resultid', ForeignKey(TransectResults.ResultID), nullable=False)
DataValue = Column('datavalue', Float(53), nullable=False)
ValueDateTime = Column('valuedatetime', DateTime, nullable=False)
ValueDateTimeUTCOffset = Column('valuedatetimeutcoffset', DateTime, nullable=False)
ValueDateTime = Column('valuedatetime', DateTimeType, nullable=False)
ValueDateTimeUTCOffset = Column('valuedatetimeutcoffset', Integer, nullable=False)
XLocation = Column('xlocation', Float(53), nullable=False)
XLocationUnitsID = Column('xlocationunitsid', ForeignKey(Units.UnitsID), nullable=False)
YLocation = Column('ylocation', Float(53), nullable=False)
Expand Down Expand Up @@ -1896,7 +1898,7 @@ class TransectResultValues(Base):
class CategoricalResultValueAnnotations(Base):

BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ValueID = Column('valueid', BigInteger, ForeignKey(CategoricalResultValues.ValueID), nullable=False)
ValueID = Column('valueid', BigIntegerType, ForeignKey(CategoricalResultValues.ValueID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)

AnnotationObj = relationship(Annotations)
Expand All @@ -1906,7 +1908,7 @@ class CategoricalResultValueAnnotations(Base):
class MeasurementResultValueAnnotations(Base):

BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ValueID = Column('valueid', BigInteger, ForeignKey(MeasurementResultValues.ValueID), nullable=False)
ValueID = Column('valueid', BigIntegerType, ForeignKey(MeasurementResultValues.ValueID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)

AnnotationObj = relationship(Annotations)
Expand All @@ -1916,7 +1918,7 @@ class MeasurementResultValueAnnotations(Base):
class PointCoverageResultValueAnnotations(Base):

BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ValueID = Column('valueid', BigInteger, ForeignKey(PointCoverageResultValues.ValueID), nullable=False)
ValueID = Column('valueid', BigIntegerType, ForeignKey(PointCoverageResultValues.ValueID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)

AnnotationObj = relationship(Annotations)
Expand All @@ -1926,7 +1928,7 @@ class PointCoverageResultValueAnnotations(Base):
class ProfileResultValueAnnotations(Base):

BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ValueID = Column('valueid', BigInteger, ForeignKey(ProfileResultValues.ValueID), nullable=False)
ValueID = Column('valueid', BigIntegerType, ForeignKey(ProfileResultValues.ValueID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)

AnnotationObj = relationship(Annotations)
Expand All @@ -1936,7 +1938,7 @@ class ProfileResultValueAnnotations(Base):
class SectionResultValueAnnotations(Base):

BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ValueID = Column('valueid', BigInteger, ForeignKey(SectionResultValues.ValueID), nullable=False)
ValueID = Column('valueid', BigIntegerType, ForeignKey(SectionResultValues.ValueID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)

AnnotationObj = relationship(Annotations)
Expand All @@ -1946,7 +1948,7 @@ class SectionResultValueAnnotations(Base):
class SpectraResultValueAnnotations(Base):

BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ValueID = Column('valueid', BigInteger, ForeignKey(SpectraResultValues.ValueID), nullable=False)
ValueID = Column('valueid', BigIntegerType, ForeignKey(SpectraResultValues.ValueID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)

AnnotationObj = relationship(Annotations)
Expand All @@ -1956,7 +1958,7 @@ class SpectraResultValueAnnotations(Base):
class TimeSeriesResultValueAnnotations(Base):

BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ValueID = Column('valueid', BigInteger, ForeignKey(TimeSeriesResultValues.ValueID), nullable=False)
ValueID = Column('valueid', BigIntegerType, ForeignKey(TimeSeriesResultValues.ValueID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)

AnnotationObj = relationship(Annotations)
Expand All @@ -1966,7 +1968,7 @@ class TimeSeriesResultValueAnnotations(Base):
class TrajectoryResultValueAnnotations(Base):

BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ValueID = Column('valueid', BigInteger, ForeignKey(TrajectoryResultValues.ValueID), nullable=False)
ValueID = Column('valueid', BigIntegerType, ForeignKey(TrajectoryResultValues.ValueID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)

AnnotationObj = relationship(Annotations)
Expand All @@ -1976,7 +1978,7 @@ class TrajectoryResultValueAnnotations(Base):
class TransectResultValueAnnotations(Base):

BridgeID = Column('bridgeid', Integer, primary_key=True, nullable=False)
ValueID = Column('valueid', BigInteger, ForeignKey(TransectResultValues.ValueID), nullable=False)
ValueID = Column('valueid', BigIntegerType, ForeignKey(TransectResultValues.ValueID), nullable=False)
AnnotationID = Column('annotationid', ForeignKey(Annotations.AnnotationID), nullable=False)

AnnotationObj = relationship(Annotations)
Expand Down
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