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@MSDLLCpapers

MSD Inventing for Life

This GitHub's main purpose is to house open source code repositories published by MSD for public use ,research, and for publications outside the United States

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  1. ovo ovo Public

    OVO, an open-source ecosystem for de novo protein design

    Python 124 22

  2. obsidian obsidian Public

    Algorithmic process optimization and AI experiment design

    Python 45 9

  3. promb promb Public

    Humanness of de-novo designed proteins

    Jupyter Notebook 41 7

  4. AbMelt AbMelt Public

    Python 26 8

  5. dedenser dedenser Public

    A Python tool for creating and downsampling chemical pointclouds.

    Python 13 3

  6. teal-agents teal-agents Public

    Python 10 10

Repositories

Showing 10 of 46 repositories
  • ovo Public

    OVO, an open-source ecosystem for de novo protein design

    MSDLLCpapers/ovo’s past year of commit activity
    Python 124 MIT 22 11 (6 issues need help) 1 Updated Apr 22, 2026
  • teal-agents Public
    MSDLLCpapers/teal-agents’s past year of commit activity
    Python 10 10 0 7 Updated Apr 20, 2026
  • MMPTTransformer Public

    Repository containing tools, training/inference code, and analysis for the MMPT project.

    MSDLLCpapers/MMPTTransformer’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Apr 15, 2026
  • miRQuest Public

    An RShiny app for the analysis of high-throughput miRNA sequencing data

    MSDLLCpapers/miRQuest’s past year of commit activity
    R 0 1 0 0 Updated Mar 27, 2026
  • ovo-containers Public
    MSDLLCpapers/ovo-containers’s past year of commit activity
    Dockerfile 2 MIT 1 0 1 Updated Mar 17, 2026
  • MRL-MC-Retention Public

    Repository for multiple condition retention time modeling (MC-Retention) and Multiple Condition adjusted Retention Time (MCaRT) dataset.

    MSDLLCpapers/MRL-MC-Retention’s past year of commit activity
    Python 2 2 0 0 Updated Mar 16, 2026
  • oncoPoS Public

    oncoPoS performs Probability of Success (PoS) calculations for a phase 3 oncology study using a Bayesian Hierarchical model. The prior in this model is based on the data observed in an earlier study, design features for the phase 3 study that is being assessed and the industry benchmark for success.

    MSDLLCpapers/oncoPoS’s past year of commit activity
    R 0 GPL-3.0 0 0 1 Updated Mar 12, 2026
  • dynamicpv Public

    Evaluate present values and cost-effectiveness with dynamic pricing and uptake

    MSDLLCpapers/dynamicpv’s past year of commit activity
    R 7 GPL-3.0 4 0 0 Updated Mar 11, 2026
  • Dengue-outbreak-monitoring Public

    Code sampling using AI to monitor Dengue outbreaks

    MSDLLCpapers/Dengue-outbreak-monitoring’s past year of commit activity
    PLpgSQL 0 0 0 0 Updated Mar 6, 2026
  • helmify Public

    This project provides an overview and implementation of the work described in "HELMify: A Hybrid Rule- and LLM-Based Generator of Peptide Monomer HELM Names".

    MSDLLCpapers/helmify’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 20, 2026
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