Rebuild LAMMPS for `*/generic` targets to make sure that CPU-specific optimizations are disabled by bedroge · Pull Request #788 · EESSI/software-layer

bedroge · 2024-10-15T08:48:05Z

The easyblock PR is not merged yet, but I want to do some test builds here already.

eessi-bot · 2024-10-15T08:48:10Z

Instance eessi-bot-mc-aws is configured to build for:

architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

eessi-build-deploy-bot-deucalion · 2024-10-15T08:48:11Z

Instance boegel-bot-deucalion is configured to build for:

architectures: aarch64/a64fx
repositories: eessi.io-2023.06-software

eessi-bot · 2024-10-15T08:48:11Z

Instance eessi-bot-mc-azure is configured to build for:

architectures: x86_64/amd/zen4
repositories: eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software, eessi.io-2023.06-compat

bedroge · 2024-10-15T08:48:41Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic

eessi-bot · 2024-10-15T08:48:45Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 23391, for details & status see Rebuild LAMMPS for */generic targets to make sure that CPU-specific optimizations are disabled #788 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 23392, for details & status see Rebuild LAMMPS for */generic targets to make sure that CPU-specific optimizations are disabled #788 (comment)

eessi-build-deploy-bot-deucalion · 2024-10-15T08:48:45Z

Updates by the bot instance boegel-bot-deucalion (click for details)

account bedroge has NO permission to send commands to the bot

eessi-bot · 2024-10-15T08:48:45Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- no jobs were submitted

eessi-bot · 2024-10-15T08:48:49Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.10/pr_788/23391

date	job status	comment
Oct 15 08:48:48 UTC 2024	submitted	job id `23391` awaits release by job manager
Oct 15 08:49:05 UTC 2024	released	job awaits launch by Slurm scheduler
Oct 15 08:55:19 UTC 2024	running	job `23391` is running
Oct 15 09:19:01 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-23391.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1728983330.tar.gz` size: 0 MiB (45 bytes) entries: 0 modules under 2023.06/software/linux/aarch64/generic/modules/all no module files in tarball software under 2023.06/software/linux/aarch64/generic/software no software packages in tarball other under 2023.06/software/linux/aarch64/generic no other files in tarball
Oct 15 09:19:01 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:aarch64-generic-node+default P: latency: 3.57 us (r:0, l:None, u:None) [ OK ] (2/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:aarch64-generic-node+default P: latency: 3.38 us (r:0, l:None, u:None) [ OK ] (3/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:aarch64-generic-node+default P: latency: 5.45 us (r:0, l:None, u:None) [ OK ] (4/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:aarch64-generic-node+default P: latency: 5.37 us (r:0, l:None, u:None) [ OK ] (5/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:aarch64-generic-node+default P: latency: 0.43 us (r:0, l:None, u:None) [ OK ] (6/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:aarch64-generic-node+default P: latency: 0.47 us (r:0, l:None, u:None) [ OK ] (7/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:aarch64-generic-node+default P: bandwidth: 19915.29 MB/s (r:0, l:None, u:None) [ OK ] (8/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:aarch64-generic-node+default P: bandwidth: 19798.36 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 8/8 test case(s) from 8 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-23391.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-10-15T08:48:53Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.10/pr_788/23392

date	job status	comment
Oct 15 08:48:52 UTC 2024	submitted	job id `23392` awaits release by job manager
Oct 15 08:49:07 UTC 2024	released	job awaits launch by Slurm scheduler
Oct 15 08:55:23 UTC 2024	running	job `23392` is running
Oct 15 09:19:03 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-23392.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1728983401.tar.gz` size: 0 MiB (45 bytes) entries: 0 modules under 2023.06/software/linux/x86_64/generic/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/generic/software no software packages in tarball other under 2023.06/software/linux/x86_64/generic no other files in tarball
Oct 15 09:19:03 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-generic-node+default P: latency: 5.04 us (r:0, l:None, u:None) [ OK ] (2/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-generic-node+default P: latency: 5.4 us (r:0, l:None, u:None) [ OK ] (3/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-generic-node+default P: latency: 10.48 us (r:0, l:None, u:None) [ OK ] (4/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-generic-node+default P: latency: 9.85 us (r:0, l:None, u:None) [ OK ] (5/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-generic-node+default P: latency: 0.72 us (r:0, l:None, u:None) [ OK ] (6/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-generic-node+default P: latency: 0.63 us (r:0, l:None, u:None) [ OK ] (7/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-generic-node+default P: bandwidth: 11221.66 MB/s (r:0, l:None, u:None) [ OK ] (8/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-generic-node+default P: bandwidth: 11202.81 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 8/8 test case(s) from 8 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-23392.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2024-10-15T09:29:15Z

The builds actually completed, and with right/expected CPU type:

x86_64/generic:

== configuring...
== Running pre-configure hook...
== Using Kokkos package with arch: CPU - EASYBUILD_GENERIC, GPU - None

aarch64/generic:

== configuring...
== Running pre-configure hook...
== Using Kokkos package with arch: CPU - ARMV80, GPU - None

However, both of them failed in the install step, because of this annoying issue again where somehow the old installation is showing up again (even though it should have been removed):

== installing...
== ... (took 6 secs)
== FAILED: Installation ended unsuccessfully (build directory: /tmp/bot/easybuild/build/LAMMPS/2Aug2023_update2/foss-2023a-kokkos): build failed (first 300 chars): Failed to remove directory /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/generic/software/LAMMPS/2Aug2023_update2-foss-2023a-kokkos even after 3 attempts.
Reasons: [OSError(39, 'Directory not empty'), OSError(39, 'Directory not empty'), OSError(39, 'Directory not empty')] (took 9 mins 59 secs)

bedroge · 2024-10-15T12:00:38Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic

eessi-build-deploy-bot-deucalion · 2024-10-15T12:00:41Z

Updates by the bot instance boegel-bot-deucalion (click for details)

account bedroge has NO permission to send commands to the bot

eessi-bot · 2024-10-15T12:00:41Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 23398, for details & status see Rebuild LAMMPS for */generic targets to make sure that CPU-specific optimizations are disabled #788 (comment)

eessi-bot · 2024-10-15T12:00:42Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted

eessi-bot · 2024-10-15T12:00:46Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.10/pr_788/23398

date	job status	comment
Oct 15 12:00:45 UTC 2024	submitted	job id `23398` awaits release by job manager
Oct 15 12:01:42 UTC 2024	released	job awaits launch by Slurm scheduler
Oct 15 12:06:44 UTC 2024	running	job `23398` is running
Oct 15 12:32:18 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-23398.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1728994970.tar.gz` size: 0 MiB (45 bytes) entries: 0 modules under 2023.06/software/linux/aarch64/generic/modules/all no module files in tarball software under 2023.06/software/linux/aarch64/generic/software no software packages in tarball other under 2023.06/software/linux/aarch64/generic no other files in tarball
Oct 15 12:32:18 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:aarch64-generic-node+default P: latency: 3.64 us (r:0, l:None, u:None) [ OK ] (2/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:aarch64-generic-node+default P: latency: 3.77 us (r:0, l:None, u:None) [ OK ] (3/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:aarch64-generic-node+default P: latency: 5.4 us (r:0, l:None, u:None) [ OK ] (4/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:aarch64-generic-node+default P: latency: 5.29 us (r:0, l:None, u:None) [ OK ] (5/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:aarch64-generic-node+default P: latency: 0.45 us (r:0, l:None, u:None) [ OK ] (6/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:aarch64-generic-node+default P: latency: 0.47 us (r:0, l:None, u:None) [ OK ] (7/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:aarch64-generic-node+default P: bandwidth: 19761.28 MB/s (r:0, l:None, u:None) [ OK ] (8/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:aarch64-generic-node+default P: bandwidth: 19711.0 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 8/8 test case(s) from 8 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-23398.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2024-10-15T12:27:38Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic

eessi-bot · 2024-10-15T12:27:41Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 23399, for details & status see Rebuild LAMMPS for */generic targets to make sure that CPU-specific optimizations are disabled #788 (comment)

eessi-bot · 2024-10-15T12:27:41Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted

eessi-build-deploy-bot-deucalion · 2024-10-15T12:27:41Z

Updates by the bot instance boegel-bot-deucalion (click for details)

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eessi-bot · 2024-10-15T12:27:45Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.10/pr_788/23399

date	job status	comment
Oct 15 12:27:44 UTC 2024	submitted	job id `23399` awaits release by job manager
Oct 15 12:28:08 UTC 2024	released	job awaits launch by Slurm scheduler
Oct 15 12:29:11 UTC 2024	running	job `23399` is running
Oct 15 12:52:40 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-23399.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1728996174.tar.gz` size: 0 MiB (45 bytes) entries: 0 modules under 2023.06/software/linux/aarch64/generic/modules/all no module files in tarball software under 2023.06/software/linux/aarch64/generic/software no software packages in tarball other under 2023.06/software/linux/aarch64/generic no other files in tarball
Oct 15 12:52:40 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:aarch64-generic-node+default P: latency: 3.54 us (r:0, l:None, u:None) [ OK ] (2/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:aarch64-generic-node+default P: latency: 3.37 us (r:0, l:None, u:None) [ OK ] (3/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:aarch64-generic-node+default P: latency: 5.4 us (r:0, l:None, u:None) [ OK ] (4/8) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:aarch64-generic-node+default P: latency: 5.4 us (r:0, l:None, u:None) [ OK ] (5/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:aarch64-generic-node+default P: latency: 0.45 us (r:0, l:None, u:None) [ OK ] (6/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:aarch64-generic-node+default P: latency: 0.47 us (r:0, l:None, u:None) [ OK ] (7/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:aarch64-generic-node+default P: bandwidth: 19506.8 MB/s (r:0, l:None, u:None) [ OK ] (8/8) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:aarch64-generic-node+default P: bandwidth: 19531.36 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 8/8 test case(s) from 8 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-23399.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

…-layer into rebuild_lammps_generic

bedroge · 2025-02-03T13:04:28Z

The permission issue should hopefully be solved now (see #871), so let's try this again...

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic

eessi-bot · 2025-02-03T13:04:35Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.02/pr_788/44400

date	job status	comment
Feb 03 13:04:34 UTC 2025	submitted	job id `44400` awaits release by job manager
Feb 03 13:05:08 UTC 2025	released	job awaits launch by Slurm scheduler
Feb 03 13:11:12 UTC 2025	running	job `44400` is running
Feb 03 13:35:03 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-44400.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1738589107.tar.gz` size: 0 MiB (45 bytes) entries: 0 modules under 2023.06/software/linux/aarch64/generic/modules/all no module files in tarball software under 2023.06/software/linux/aarch64/generic/software no software packages in tarball other under 2023.06/software/linux/aarch64/generic no other files in tarball
Feb 03 13:35:03 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/8) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:aarch64_generic+default P: latency: 3.6 us (r:0, l:None, u:None) [ OK ] (2/8) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:aarch64_generic+default P: latency: 3.65 us (r:0, l:None, u:None) [ OK ] (3/8) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:aarch64_generic+default P: latency: 5.4 us (r:0, l:None, u:None) [ OK ] (4/8) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:aarch64_generic+default P: latency: 5.55 us (r:0, l:None, u:None) [ OK ] (5/8) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_generic+default P: latency: 0.44 us (r:0, l:None, u:None) [ OK ] (6/8) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_generic+default P: latency: 0.47 us (r:0, l:None, u:None) [ OK ] (7/8) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_generic+default P: bandwidth: 20338.11 MB/s (r:0, l:None, u:None) [ OK ] (8/8) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_generic+default P: bandwidth: 20663.89 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 8/8 test case(s) from 8 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-44400.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2025-02-03T13:04:39Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.02/pr_788/44401

date	job status	comment
Feb 03 13:04:38 UTC 2025	submitted	job id `44401` awaits release by job manager
Feb 03 13:05:10 UTC 2025	released	job awaits launch by Slurm scheduler
Feb 03 13:12:15 UTC 2025	running	job `44401` is running
Feb 03 13:36:05 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-44401.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1738589254.tar.gz` size: 0 MiB (45 bytes) entries: 0 modules under 2023.06/software/linux/x86_64/generic/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/generic/software no software packages in tarball other under 2023.06/software/linux/x86_64/generic no other files in tarball
Feb 03 13:36:05 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/8) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86_64_generic+default P: latency: 3.0 us (r:0, l:None, u:None) [ OK ] (2/8) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86_64_generic+default P: latency: 3.23 us (r:0, l:None, u:None) [ OK ] (3/8) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86_64_generic+default P: latency: 5.96 us (r:0, l:None, u:None) [ OK ] (4/8) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86_64_generic+default P: latency: 5.93 us (r:0, l:None, u:None) [ OK ] (5/8) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86_64_generic+default P: latency: 0.75 us (r:0, l:None, u:None) [ OK ] (6/8) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86_64_generic+default P: latency: 0.71 us (r:0, l:None, u:None) [ OK ] (7/8) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86_64_generic+default P: bandwidth: 10672.32 MB/s (r:0, l:None, u:None) [ OK ] (8/8) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86_64_generic+default P: bandwidth: 10707.23 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 8/8 test case(s) from 8 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-44401.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2025-02-03T14:16:41Z

Slightly different error now:

Target location /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/generic/software/LAMMPS/2Aug2023_update2-foss-2023a-kokkos/examples to copy /tmp/bot/easybuild/build/LAMMPS/2Aug2023_update2/foss-2023a-kokkos/lammps-stable_2Aug2023_update2/examples to already exists

Apparently, it doesn't like the workaround that recreates these subdirs (even though they're empty)...

…nd permission issues (instead of recreating them)

bedroge · 2025-02-03T14:22:37Z

Trying a slightly different approach (as an ls on the removed subdirs should solve the issue too, according to #556 (comment)).

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic

eessi-bot · 2025-02-03T14:22:39Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 44402, for details & status see Rebuild LAMMPS for */generic targets to make sure that CPU-specific optimizations are disabled #788 (comment)

eessi-bot · 2025-02-03T14:22:40Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- no jobs were submitted

gpu-bot-ugent · 2025-02-03T14:22:40Z

Updates by the bot instance eessi-bot-vsc-ugent (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- no jobs were submitted

eessi-bot · 2025-02-03T14:22:44Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.02/pr_788/44402

date	job status	comment
Feb 03 14:22:43 UTC 2025	submitted	job id `44402` awaits release by job manager
Feb 03 14:23:12 UTC 2025	released	job awaits launch by Slurm scheduler
Feb 03 14:24:15 UTC 2025	running	job `44402` is running
Feb 03 15:11:25 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-44402.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1738594654.tar.gz` size: 314 MiB (329359815 bytes) entries: 9270 modules under 2023.06/software/linux/x86_64/generic/modules/all `LAMMPS/29Aug2024-foss-2023b-kokkos.lua` `LAMMPS/2Aug2023_update2-foss-2023a-kokkos.lua` software under 2023.06/software/linux/x86_64/generic/software `LAMMPS/29Aug2024-foss-2023b-kokkos` `LAMMPS/2Aug2023_update2-foss-2023a-kokkos` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Feb 03 15:11:25 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:x86_64_generic+default P: perf: 413.486 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86_64_generic+default P: perf: 435.639 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86_64_generic+default P: latency: 3.15 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86_64_generic+default P: latency: 3.08 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86_64_generic+default P: latency: 5.8 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86_64_generic+default P: latency: 5.75 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86_64_generic+default P: latency: 0.69 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86_64_generic+default P: latency: 0.66 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86_64_generic+default P: bandwidth: 10768.28 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86_64_generic+default P: bandwidth: 10962.94 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-44402.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2025-02-03T15:09:19Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic

eessi-bot · 2025-02-03T15:09:22Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 44403, for details & status see Rebuild LAMMPS for */generic targets to make sure that CPU-specific optimizations are disabled #788 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 44404, for details & status see Rebuild LAMMPS for */generic targets to make sure that CPU-specific optimizations are disabled #788 (comment)

eessi-bot · 2025-02-03T15:09:23Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- no jobs were submitted

gpu-bot-ugent · 2025-02-03T15:09:23Z

Updates by the bot instance eessi-bot-vsc-ugent (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- no jobs were submitted

eessi-bot · 2025-02-03T15:09:27Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.02/pr_788/44403

date	job status	comment
Feb 03 15:09:26 UTC 2025	submitted	job id `44403` awaits release by job manager
Feb 03 15:10:20 UTC 2025	released	job awaits launch by Slurm scheduler
Feb 03 15:16:29 UTC 2025	running	job `44403` is running
Feb 03 16:02:36 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-44403.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1738597602.tar.gz` size: 301 MiB (316076421 bytes) entries: 9270 modules under 2023.06/software/linux/aarch64/generic/modules/all `LAMMPS/29Aug2024-foss-2023b-kokkos.lua` `LAMMPS/2Aug2023_update2-foss-2023a-kokkos.lua` software under 2023.06/software/linux/aarch64/generic/software `LAMMPS/29Aug2024-foss-2023b-kokkos` `LAMMPS/2Aug2023_update2-foss-2023a-kokkos` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Feb 03 16:02:36 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_generic+default P: perf: 697.436 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_generic+default P: perf: 704.536 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:aarch64_generic+default P: latency: 3.51 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:aarch64_generic+default P: latency: 3.38 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:aarch64_generic+default P: latency: 5.43 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:aarch64_generic+default P: latency: 5.52 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_generic+default P: latency: 0.45 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_generic+default P: latency: 0.47 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_generic+default P: bandwidth: 20605.45 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_generic+default P: bandwidth: 20840.48 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-44403.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Feb 04 15:14:12 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1738597602.tar.gz` to S3 bucket succeeded

eessi-bot · 2025-02-03T15:09:32Z

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.02/pr_788/44404

date	job status	comment
Feb 03 15:09:31 UTC 2025	submitted	job id `44404` awaits release by job manager
Feb 03 15:10:23 UTC 2025	released	job awaits launch by Slurm scheduler
Feb 03 15:17:33 UTC 2025	running	job `44404` is running
Feb 03 16:05:41 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-44404.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1738597887.tar.gz` size: 314 MiB (329346034 bytes) entries: 9270 modules under 2023.06/software/linux/x86_64/generic/modules/all `LAMMPS/29Aug2024-foss-2023b-kokkos.lua` `LAMMPS/2Aug2023_update2-foss-2023a-kokkos.lua` software under 2023.06/software/linux/x86_64/generic/software `LAMMPS/29Aug2024-foss-2023b-kokkos` `LAMMPS/2Aug2023_update2-foss-2023a-kokkos` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Feb 03 16:05:41 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:x86_64_generic+default P: perf: 416.206 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86_64_generic+default P: perf: 437.235 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86_64_generic+default P: latency: 3.29 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86_64_generic+default P: latency: 3.18 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86_64_generic+default P: latency: 6.95 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86_64_generic+default P: latency: 5.65 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86_64_generic+default P: latency: 0.71 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86_64_generic+default P: latency: 0.9 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86_64_generic+default P: bandwidth: 10572.09 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86_64_generic+default P: bandwidth: 10540.09 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-44404.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Feb 04 15:13:48 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1738597887.tar.gz` to S3 bucket succeeded

casparvl · 2025-02-04T15:13:51Z

Checked the build logs for 44403 and 44404, indeed these are GENERIC builds. Deploying.

bedroge · 2025-02-04T15:51:16Z

In order to clean up leftovers from the old installations (for both this PR and #906), I've run the following:

#!/bin/bash
cvmfs_server transaction software.eessi.io

rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/LAMMPS/29Aug2024-foss-2023b-kokkos
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/generic/software/LAMMPS/2Aug2023_update2-foss-2023a-kokkos
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/generic/software/LAMMPS/29Aug2024-foss-2023b-kokkos
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/generic/software/LAMMPS/2Aug2023_update2-foss-2023a-kokkos
rm -rf /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/sapphire_rapids/software/LAMMPS/2Aug2023_update2-foss-2023a-kokkos

cd /cvmfs/software.eessi.io/versions

tar -xzf /srv/tmp/tarballs/eessi-2023.06-software-linux-aarch64-generic-1738597602.tar.gz
tar -xzf /srv/tmp/tarballs/eessi-2023.06-software-linux-x86_64-generic-1738597887.tar.gz
tar -xzf /srv/tmp/tarballs/eessi-2023.06-software-linux-x86_64-intel-sapphire_rapids-1738616267.tar.gz

cd

cvmfs_server diff --worktree software.eessi.io > PR788and906-diff.txt
cvmfs_server publish -m "rebuilds of LAMMPS for */generic and sapphirerapids, PR 788 and 906" software.eessi.io

eessi-bot · 2025-02-04T16:45:51Z

PR merged! Moved ['/project/def-users/SHARED/jobs/2024.10/pr_788/23391', '/project/def-users/SHARED/jobs/2024.10/pr_788/23392', '/project/def-users/SHARED/jobs/2024.10/pr_788/23398', '/project/def-users/SHARED/jobs/2024.10/pr_788/23399', '/project/def-users/SHARED/jobs/2025.02/pr_788/44400', '/project/def-users/SHARED/jobs/2025.02/pr_788/44401', '/project/def-users/SHARED/jobs/2025.02/pr_788/44402', '/project/def-users/SHARED/jobs/2025.02/pr_788/44403', '/project/def-users/SHARED/jobs/2025.02/pr_788/44404'] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.02.04

eessi-bot · 2025-02-04T16:45:51Z

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.02.04

gpu-bot-ugent · 2025-02-04T16:45:52Z

PR merged! Moved [] to /scratch/gent/vo/002/gvo00211/SHARED/trash_bin/EESSI/software-layer/2025.02.04

rebuild LAMMPS for generic CPU targets

c1d4394

bedroge added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Oct 15, 2024

individually remove every file of the installation dir

0e20f00

only find and remove files, and then remove the entire install dir

1091ab7

bedroge mentioned this pull request Oct 15, 2024

Permission denied errors when rebuilding (Python?) bundles with extensions that install binaries #556

Closed

easyblocks PR has been merged, use merge commit

eb5f29b

bedroge mentioned this pull request Feb 3, 2025

{2023.06}[2023a] Rebuild LAMMPS 2Aug2023_update2 with proper Sapphire Rapids support #906

Merged

bedroge added 2 commits February 3, 2025 14:01

Merge branch '2023.06-software.eessi.io' of github.com:EESSI/software…

ab45d92

…-layer into rebuild_lammps_generic

remove find command

8d5ef69

do an ls on the original subdirs of the installation dir to work arou…

aa31e15

…nd permission issues (instead of recreating them)

no need to do the ls on subdirs in a for loop, do them all at once

ecbc361

bedroge mentioned this pull request Feb 3, 2025

Improved workaround that solves permission issues for rebuilds #907

Merged

Merge branch '2023.06-software.eessi.io' into rebuild_lammps_generic

d7d635d

bedroge added the ready-to-deploy Mark a PR as ready to deploy label Feb 3, 2025

bedroge linked an issue Feb 3, 2025 that may be closed by this pull request

Building LAMMPS-2Aug2023_update2-foss-2023a-kokkos.eb may fail for --optarch=GENERIC #545

Closed

casparvl added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Feb 4, 2025

casparvl approved these changes Feb 4, 2025

View reviewed changes

casparvl merged commit 2404c10 into EESSI:2023.06-software.eessi.io Feb 4, 2025
49 checks passed

bedroge deleted the rebuild_lammps_generic branch February 4, 2025 17:00

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