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{2023.6}[2023b,a64fx] SciPy-bundle 2023.11#776

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bedroge merged 2 commits intoEESSI:2023.06-software.eessi.iofrom
boegel:2023.06-software.eessi.io_a64fx_GROMACS-2024.1-foss-2023b
Oct 6, 2024
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{2023.6}[2023b,a64fx] SciPy-bundle 2023.11#776
bedroge merged 2 commits intoEESSI:2023.06-software.eessi.iofrom
boegel:2023.06-software.eessi.io_a64fx_GROMACS-2024.1-foss-2023b

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@boegel boegel commented Oct 4, 2024

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@boegel boegel added 2023.06-software.eessi.io 2023.06 version of software.eessi.io a64fx labels Oct 4, 2024
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eessi-bot bot commented Oct 4, 2024

Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

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eessi-build-deploy-bot-deucalion bot commented Oct 4, 2024

Instance boegel-bot-deucalion is configured to build for:

  • architectures: aarch64/a64fx
  • repositories: eessi.io-2023.06-software

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eessi-bot bot commented Oct 4, 2024

Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software, eessi.io-2023.06-compat

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boegel commented Oct 4, 2024

bot: build repo:eessi.io-2023.06-software arch:aarch64/a64fx

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eessi-bot bot commented Oct 4, 2024 •
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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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eessi-build-deploy-bot-deucalion bot commented Oct 4, 2024 •
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Updates by the bot instance boegel-bot-deucalion (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

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eessi-bot bot commented Oct 4, 2024 •
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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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eessi-build-deploy-bot-deucalion bot commented Oct 4, 2024 •
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New job on instance boegel-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/kehoste/project_dir/bot/jobs/2024.10/pr_776/155874

date job status comment
Oct 04 16:02:53 UTC 2024 submitted job id 155874 awaits release by job manager
Oct 04 16:02:56 UTC 2024 released job awaits launch by Slurm scheduler
Oct 04 16:03:59 UTC 2024 running job 155874 is running
Oct 04 23:30:12 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-155874.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-1728081887.tar.gzsize: 567 MiB (595399368 bytes)
entries: 72228
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
Catch2/2.13.9-GCCcore-13.2.0.lua
cffi/1.15.1-GCCcore-13.2.0.lua
cryptography/41.0.5-GCCcore-13.2.0.lua
Eigen/3.4.0-GCCcore-13.2.0.lua
expat/2.5.0-GCCcore-13.2.0.lua
flit/3.9.0-GCCcore-13.2.0.lua
gfbf/2023b.lua
git/2.42.0-GCCcore-13.2.0.lua
hatchling/1.18.0-GCCcore-13.2.0.lua
hypothesis/6.90.0-GCCcore-13.2.0.lua
Meson/1.2.3-GCCcore-13.2.0.lua
meson-python/0.15.0-GCCcore-13.2.0.lua
mpi4py/3.1.5-gompi-2023b.lua
networkx/3.2.1-gfbf-2023b.lua
Ninja/1.11.1-GCCcore-13.2.0.lua
patchelf/0.18.0-GCCcore-13.2.0.lua
poetry/1.6.1-GCCcore-13.2.0.lua
pybind11/2.11.1-GCCcore-13.2.0.lua
Python-bundle-PyPI/2023.10-GCCcore-13.2.0.lua
Rust/1.73.0-GCCcore-13.2.0.lua
scikit-build/0.17.6-GCCcore-13.2.0.lua
scikit-build-core/0.9.3-GCCcore-13.2.0.lua
SciPy-bundle/2023.11-gfbf-2023b.lua
setuptools-rust/1.8.0-GCCcore-13.2.0.lua
virtualenv/20.24.6-GCCcore-13.2.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
Catch2/2.13.9-GCCcore-13.2.0
cffi/1.15.1-GCCcore-13.2.0
cryptography/41.0.5-GCCcore-13.2.0
Eigen/3.4.0-GCCcore-13.2.0
expat/2.5.0-GCCcore-13.2.0
flit/3.9.0-GCCcore-13.2.0
gfbf/2023b
git/2.42.0-GCCcore-13.2.0
hatchling/1.18.0-GCCcore-13.2.0
hypothesis/6.90.0-GCCcore-13.2.0
Meson/1.2.3-GCCcore-13.2.0
meson-python/0.15.0-GCCcore-13.2.0
mpi4py/3.1.5-gompi-2023b
networkx/3.2.1-gfbf-2023b
Ninja/1.11.1-GCCcore-13.2.0
patchelf/0.18.0-GCCcore-13.2.0
poetry/1.6.1-GCCcore-13.2.0
pybind11/2.11.1-GCCcore-13.2.0
Python-bundle-PyPI/2023.10-GCCcore-13.2.0
Rust/1.73.0-GCCcore-13.2.0
scikit-build/0.17.6-GCCcore-13.2.0
scikit-build-core/0.9.3-GCCcore-13.2.0
SciPy-bundle/2023.11-gfbf-2023b
setuptools-rust/1.8.0-GCCcore-13.2.0
virtualenv/20.24.6-GCCcore-13.2.0
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
Oct 04 23:30:12 UTC 2024 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-155874.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@boegel boegel mentioned this pull request Oct 4, 2024
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boegel commented Oct 5, 2024

Only GROMACS itself failed, with a somewhat shady error:

...
============= 3 passed, 1 skipped, 1 warning in 923.47s (0:15:23) ==============
make[3]: Leaving directory '/tmp/kehoste/easybuild/build/GROMACS/2024.1/foss-2023b/easybuild_obj'
[100%] Built target gmxapi_extension_pytest
make[2]: Leaving directory '/tmp/kehoste/easybuild/build/GROMACS/2024.1/foss-2023b/easybuild_obj'
make[1]: *** [CMakeFiles/Makefile2:3472: CMakeFiles/check.dir/rule] Error 2
make[1]: Leaving directory '/tmp/kehoste/easybuild/build/GROMACS/2024.1/foss-2023b/easybuild_obj'
make: *** [Makefile:632: check] Error 2

I can't see the actual culprit, but I'm seeing similar trouble when building GROMACS/2024.1-foss-2023b locally, so it probably has nothing to do with A64FX...

I'll re-work this PR so it's just for SciPy-bundle, to take one step at a time...

@boegel boegel changed the title {2023.6}[2023b,a64fx] SciPy-bundle 2023.11 + GROMACS 2024.1 {2023.6}[2023b,a64fx] SciPy-bundle 2023.11 Oct 5, 2024
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boegel commented Oct 5, 2024

bot: build repo:eessi.io-2023.06-software arch:aarch64/a64fx

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eessi-build-deploy-bot-deucalion bot commented Oct 5, 2024 •
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Updates by the bot instance boegel-bot-deucalion (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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eessi-bot bot commented Oct 5, 2024 •
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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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eessi-build-deploy-bot-deucalion bot commented Oct 5, 2024 •
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New job on instance boegel-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/kehoste/project_dir/bot/jobs/2024.10/pr_776/156035

date job status comment
Oct 05 07:33:58 UTC 2024 submitted job id 156035 awaits release by job manager
Oct 05 07:34:17 UTC 2024 released job awaits launch by Slurm scheduler
Oct 05 07:35:19 UTC 2024 running job 156035 is running
Oct 05 14:04:00 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-156035.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-1728135212.tar.gzsize: 560 MiB (587709294 bytes)
entries: 70657
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
Catch2/2.13.9-GCCcore-13.2.0.lua
cffi/1.15.1-GCCcore-13.2.0.lua
cryptography/41.0.5-GCCcore-13.2.0.lua
Eigen/3.4.0-GCCcore-13.2.0.lua
expat/2.5.0-GCCcore-13.2.0.lua
flit/3.9.0-GCCcore-13.2.0.lua
gfbf/2023b.lua
git/2.42.0-GCCcore-13.2.0.lua
hatchling/1.18.0-GCCcore-13.2.0.lua
hypothesis/6.90.0-GCCcore-13.2.0.lua
Meson/1.2.3-GCCcore-13.2.0.lua
meson-python/0.15.0-GCCcore-13.2.0.lua
Ninja/1.11.1-GCCcore-13.2.0.lua
patchelf/0.18.0-GCCcore-13.2.0.lua
poetry/1.6.1-GCCcore-13.2.0.lua
pybind11/2.11.1-GCCcore-13.2.0.lua
Python-bundle-PyPI/2023.10-GCCcore-13.2.0.lua
Rust/1.73.0-GCCcore-13.2.0.lua
scikit-build/0.17.6-GCCcore-13.2.0.lua
SciPy-bundle/2023.11-gfbf-2023b.lua
setuptools-rust/1.8.0-GCCcore-13.2.0.lua
virtualenv/20.24.6-GCCcore-13.2.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
Catch2/2.13.9-GCCcore-13.2.0
cffi/1.15.1-GCCcore-13.2.0
cryptography/41.0.5-GCCcore-13.2.0
Eigen/3.4.0-GCCcore-13.2.0
expat/2.5.0-GCCcore-13.2.0
flit/3.9.0-GCCcore-13.2.0
gfbf/2023b
git/2.42.0-GCCcore-13.2.0
hatchling/1.18.0-GCCcore-13.2.0
hypothesis/6.90.0-GCCcore-13.2.0
Meson/1.2.3-GCCcore-13.2.0
meson-python/0.15.0-GCCcore-13.2.0
Ninja/1.11.1-GCCcore-13.2.0
patchelf/0.18.0-GCCcore-13.2.0
poetry/1.6.1-GCCcore-13.2.0
pybind11/2.11.1-GCCcore-13.2.0
Python-bundle-PyPI/2023.10-GCCcore-13.2.0
Rust/1.73.0-GCCcore-13.2.0
scikit-build/0.17.6-GCCcore-13.2.0
SciPy-bundle/2023.11-gfbf-2023b
setuptools-rust/1.8.0-GCCcore-13.2.0
virtualenv/20.24.6-GCCcore-13.2.0
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
Oct 05 14:04:00 UTC 2024 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-156035.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 05 21:19:10 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-aarch64-a64fx-1728135212.tar.gz to S3 bucket succeeded

@boegel boegel added the bot:deploy Ask bot to deploy missing software installations to EESSI label Oct 5, 2024
@bedroge bedroge merged commit 362f6ce into EESSI:2023.06-software.eessi.io Oct 6, 2024
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PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2024.10.06

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eessi-bot bot commented Oct 6, 2024

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2024.10.06

@boegel boegel deleted the 2023.06-software.eessi.io_a64fx_GROMACS-2024.1-foss-2023b branch October 6, 2024 09:52
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