[DEBUG ONLY - don't merge] Test pr 674 v2 by casparvl · Pull Request #677 · EESSI/software-layer

casparvl · 2024-08-19T14:53:39Z

No description provided.

…the test step that we just build. This shows that PR 674 does what it should be doing.

eessi-bot · 2024-08-19T14:53:42Z

Instance eessi-bot-mc-aws is configured to build for:

architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

eessi-bot · 2024-08-19T14:53:43Z

Instance eessi-bot-mc-azure is configured to build for:

architectures: x86_64/amd/zen4
repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat, eessi-hpc.org-2023.06-software, eessi.io-2023.06-software

casparvl · 2024-08-19T14:54:36Z

bot: build repo:eessi.io-2023.06-software arch:zen3

eessi-bot · 2024-08-19T14:54:39Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:zen3 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:zen3
handling command build repository:eessi.io-2023.06-software architecture:zen3 resulted in:
- submitted job 16642, for details & status see [DEBUG ONLY - don't merge] Test pr 674 v2 #677 (comment)

eessi-bot · 2024-08-19T14:54:40Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:zen3 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:zen3
handling command build repository:eessi.io-2023.06-software architecture:zen3 resulted in:
- no jobs were submitted

eessi-bot · 2024-08-19T14:54:43Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_677/16642

date	job status	comment
Aug 19 14:54:42 UTC 2024	submitted	job id `16642` awaits release by job manager
Aug 19 14:55:37 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 19 15:00:51 UTC 2024	running	job `16642` is running
Aug 19 15:17:52 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16642.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1724079738.tar.gz` size: 0 MiB (132224 bytes) entries: 24 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `patchelf/0.17.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `patchelf/0.17.2-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
Aug 19 15:17:52 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 18/18 test case(s) from 18 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-16642.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

casparvl · 2024-08-19T15:09:40Z

bot: build repo:eessi.io-2023.06-software arch:zen2

eessi-bot · 2024-08-19T15:09:44Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:zen2 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:zen2
handling command build repository:eessi.io-2023.06-software architecture:zen2 resulted in:
- submitted job 16645, for details & status see [DEBUG ONLY - don't merge] Test pr 674 v2 #677 (comment)

eessi-bot · 2024-08-19T15:09:44Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:zen2 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:zen2
handling command build repository:eessi.io-2023.06-software architecture:zen2 resulted in:
- no jobs were submitted

eessi-bot · 2024-08-19T15:09:48Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_677/16645

date	job status	comment
Aug 19 15:09:47 UTC 2024	submitted	job id `16645` awaits release by job manager
Aug 19 15:10:21 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 19 15:15:40 UTC 2024	running	job `16645` is running
Aug 19 15:18:53 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16645.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1724080624.tar.gz` size: 0 MiB (132095 bytes) entries: 24 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `patchelf/0.17.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `patchelf/0.17.2-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Aug 19 15:18:53 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason Failed for unknown reason Details ✅ job output file `slurm-16645.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

… from

casparvl · 2024-08-20T07:58:23Z

bot: build repo:eessi.io-2023.06-software arch:zen2

eessi-bot · 2024-08-20T07:58:27Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:zen2 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:zen2
handling command build repository:eessi.io-2023.06-software architecture:zen2 resulted in:
- submitted job 16696, for details & status see [DEBUG ONLY - don't merge] Test pr 674 v2 #677 (comment)

eessi-bot · 2024-08-20T07:58:27Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:zen2 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:zen2
handling command build repository:eessi.io-2023.06-software architecture:zen2 resulted in:
- no jobs were submitted

eessi-bot · 2024-08-20T07:58:31Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_677/16696

date	job status	comment
Aug 20 07:58:30 UTC 2024	submitted	job id `16696` awaits release by job manager
Aug 20 07:59:21 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 08:04:28 UTC 2024	running	job `16696` is running
Aug 20 08:06:30 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16696.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1724141119.tar.gz` size: 0 MiB (131018 bytes) entries: 24 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `patchelf/0.17.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `patchelf/0.17.2-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Aug 20 08:06:30 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16696.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

casparvl · 2024-08-20T08:45:45Z

bot: build repo:eessi.io-2023.06-software arch:zen3

eessi-bot · 2024-08-20T08:45:47Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:zen3 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:zen3
handling command build repository:eessi.io-2023.06-software architecture:zen3 resulted in:
- submitted job 16700, for details & status see [DEBUG ONLY - don't merge] Test pr 674 v2 #677 (comment)

eessi-bot · 2024-08-20T08:45:48Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:zen3 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:zen3
handling command build repository:eessi.io-2023.06-software architecture:zen3 resulted in:
- no jobs were submitted

eessi-bot · 2024-08-20T08:45:52Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_677/16700

date	job status	comment
Aug 20 08:45:51 UTC 2024	submitted	job id `16700` awaits release by job manager
Aug 20 08:46:51 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 08:58:56 UTC 2024	running	job `16700` is running
Aug 20 09:00:58 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16700.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1724144375.tar.gz` size: 0 MiB (130877 bytes) entries: 24 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `patchelf/0.17.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `patchelf/0.17.2-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
Aug 20 09:00:58 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16700.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

casparvl · 2024-08-20T09:04:27Z

bot: build repo:eessi.io-2023.06-software arch:zen3

eessi-bot · 2024-08-20T09:04:30Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:zen3 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:zen3
handling command build repository:eessi.io-2023.06-software architecture:zen3 resulted in:
- submitted job 16703, for details & status see [DEBUG ONLY - don't merge] Test pr 674 v2 #677 (comment)

eessi-bot · 2024-08-20T09:04:31Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:zen3 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:zen3
handling command build repository:eessi.io-2023.06-software architecture:zen3 resulted in:
- no jobs were submitted

eessi-bot · 2024-08-20T09:04:34Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_677/16703

date	job status	comment
Aug 20 09:04:33 UTC 2024	submitted	job id `16703` awaits release by job manager
Aug 20 09:05:03 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 20 09:06:07 UTC 2024	running	job `16703` is running
Aug 20 09:07:08 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16703.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1724144791.tar.gz` size: 0 MiB (132391 bytes) entries: 24 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `patchelf/0.17.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `patchelf/0.17.2-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
Aug 20 09:07:08 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16703.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

casparvl · 2024-08-20T09:09:49Z

Ok, as expected, we are not able to see the patchelf we build in the build step:

module av patchelf/0.17.2-GCCcore-12.2.0
No module(s) or extension(s) found!
If the avail list is too long consider trying:

"module --default avail" or "ml -d av" to just list the default modules.
"module overview" or "ml ov" to display the number of modules for each name.

Use "module spider" to find all possible modules and extensions.
Use "module keyword key1 key2 ..." to search for all possible modules matching
any of the "keys".


module load patchelf/0.17.2-GCCcore-12.2.0
Lmod has detected the following error: The following module(s) are unknown:
"patchelf/0.17.2-GCCcore-12.2.0"

Please check the spelling or version number. Also try "module spider ..."
It is also possible your cache file is out-of-date; it may help to try:
  $ module --ignore_cache load "patchelf/0.17.2-GCCcore-12.2.0"

Also make sure that all modulefiles written in TCL start with the string
#%Module



module --ignore_cache load patchelf/0.17.2-GCCcore-12.2.0
Lmod has detected the following error: The following module(s) are unknown:
"patchelf/0.17.2-GCCcore-12.2.0"

Please check the spelling or version number. Also try "module spider ..."
It is also possible your cache file is out-of-date; it may help to try:
  $ module --ignore_cache load "patchelf/0.17.2-GCCcore-12.2.0"

Also make sure that all modulefiles written in TCL start with the string
#%Module



Command -v patchelf
/cvmfs/software.eessi.io/versions/2023.06/compat/linux/x86_64/usr/bin/patchelf
EBROOTPATCHELF:
patchelf --version
patchelf 0.18.0
ls -al /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen3/modules/all/patchelf/
total 8
drwxr-xr-x   2 bot bot 4096 Nov 28  2023 .
drwxr-xr-x 382 bot bot   60 Nov 27  2023 ..
-rw-rw-r--   1 bot bot 1072 Nov 27  2023 0.18.0-GCCcore-12.3.0.lua
-rw-rw-r--   1 bot bot 1072 Jan  5  2024 0.18.0-GCCcore-13.2.0.lua

Together with #676 (comment) essentially this means that Thomas' PR https://github.com/EESSI/software-layer/pull/674/files is working as it should be.

casparvl · 2024-08-20T11:21:47Z

This PR proved #674 works. We've merged #674 , so we can close this now

Caspar van Leeuwen added 2 commits August 19, 2024 16:52

Show that in this feature branch, we cannot actually use a module in …

90d3989

…the test step that we just build. This shows that PR 674 does what it should be doing.

Also try to write something, to make sure the overlay is read-only

62acadd

Ignore cache

51961da

Command -v on patchelf, and echo ebrootpatchelf to see where it comes…

0f8dac9

… from

More verbosity

187b716

casparvl mentioned this pull request Aug 20, 2024

use upper directory of former 'rw' session in 'ro' mode #674

Merged

casparvl closed this Aug 20, 2024

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