{2023.06}[foss/2023a] R-bundle-CRAN 2023.12 by trz42 · Pull Request #428 · EESSI/software-layer

trz42 · 2023-12-17T09:57:35Z

Attempt to add R-bundle-CRAN/2023.12 to software.eessi.io/2023.06.

License:

ca. 1100 R packages $\rightarrow$ need automation to determine individual licenses

Missing installations:

25 out of 148 required modules missing:

* NLopt/2.7.1-GCCcore-12.3.0 (NLopt-2.7.1-GCCcore-12.3.0.eb)
* nettle/3.9.1-GCCcore-12.3.0 (nettle-3.9.1-GCCcore-12.3.0.eb)
* libogg/1.3.5-GCCcore-12.3.0 (libogg-1.3.5-GCCcore-12.3.0.eb)
* FLAC/1.4.2-GCCcore-12.3.0 (FLAC-1.4.2-GCCcore-12.3.0.eb)
* libvorbis/1.3.7-GCCcore-12.3.0 (libvorbis-1.3.7-GCCcore-12.3.0.eb)
* Xvfb/21.1.8-GCCcore-12.3.0 (Xvfb-21.1.8-GCCcore-12.3.0.eb)
* libopus/1.4-GCCcore-12.3.0 (libopus-1.4-GCCcore-12.3.0.eb)
* libsndfile/1.2.2-GCCcore-12.3.0 (libsndfile-1.2.2-GCCcore-12.3.0.eb)
* PostgreSQL/16.1-GCCcore-12.3.0 (PostgreSQL-16.1-GCCcore-12.3.0.eb)
* GEOS/3.12.0-GCC-12.3.0 (GEOS-3.12.0-GCC-12.3.0.eb)
* libgeotiff/1.7.1-GCCcore-12.3.0 (libgeotiff-1.7.1-GCCcore-12.3.0.eb)
* libtirpc/1.3.3-GCCcore-12.3.0 (libtirpc-1.3.3-GCCcore-12.3.0.eb)
* HDF/4.2.16-2-GCCcore-12.3.0 (HDF-4.2.16-2-GCCcore-12.3.0.eb)
* CFITSIO/4.3.0-GCCcore-12.3.0 (CFITSIO-4.3.0-GCCcore-12.3.0.eb)
* arpack-ng/3.9.0-foss-2023a (arpack-ng-3.9.0-foss-2023a.eb)
* Armadillo/12.6.2-foss-2023a (Armadillo-12.6.2-foss-2023a.eb)
* json-c/0.16-GCCcore-12.3.0 (json-c-0.16-GCCcore-12.3.0.eb)
* Xerces-C++/3.2.4-GCCcore-12.3.0 (Xerces-C++-3.2.4-GCCcore-12.3.0.eb)
* Imath/3.1.7-GCCcore-12.3.0 (Imath-3.1.7-GCCcore-12.3.0.eb)
* OpenEXR/3.1.7-GCCcore-12.3.0 (OpenEXR-3.1.7-GCCcore-12.3.0.eb)
* Brunsli/0.1-GCCcore-12.3.0 (Brunsli-0.1-GCCcore-12.3.0.eb)
* LERC/4.0.0-GCCcore-12.3.0 (LERC-4.0.0-GCCcore-12.3.0.eb)
* SWIG/4.1.1-GCCcore-12.3.0 (SWIG-4.1.1-GCCcore-12.3.0.eb)
* GDAL/3.7.1-foss-2023a (GDAL-3.7.1-foss-2023a.eb)
* R-bundle-CRAN/2023.12-foss-2023a (R-bundle-CRAN-2023.12-foss-2023a.eb)

eessi-bot · 2023-12-17T09:57:39Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

trz42 · 2023-12-17T09:58:44Z

bot: build repo:eessi.io-2023.06-software

eessi-bot · 2023-12-17T09:58:46Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software from trz42
- expanded format: build repository:eessi.io-2023.06-software
handling command build repository:eessi.io-2023.06-software resulted in:
- submitted job 2491, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
- submitted job 2492, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
- submitted job 2493, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
- submitted job 2494, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
- submitted job 2495, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
- submitted job 2496, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
- submitted job 2497, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
- submitted job 2498, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)

eessi-bot · 2023-12-17T09:59:03Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_428/2491

date	job status	comment
Dec 17 09:59:02 UTC 2023	submitted	job id `2491` awaits release by job manager
Dec 17 09:59:26 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 17 10:05:54 UTC 2023	running	job `2491` is running
Dec 17 10:29:23 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2491.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1702808891.tar.gz` size: 31 MiB (33480843 bytes) entries: 2409 modules under 2023.06/software/linux/x86_64/generic/modules/all `FLAC/1.4.2-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `GMP/6.2.1-GCCcore-12.3.0.lua` `GSL/2.7-GCC-12.3.0.lua` `LAME/3.100-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `libxslt/1.1.38-GCCcore-12.3.0.lua` `LittleCMS/2.15-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `UDUNITS/2.2.28-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `FLAC/1.4.2-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `GMP/6.2.1-GCCcore-12.3.0` `GSL/2.7-GCC-12.3.0` `LAME/3.100-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `libxslt/1.1.38-GCCcore-12.3.0` `LittleCMS/2.15-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `UDUNITS/2.2.28-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 17 10:29:23 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-17T09:59:04Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_428/2492

date	job status	comment
Dec 17 09:59:03 UTC 2023	submitted	job id `2492` awaits release by job manager
Dec 17 09:59:28 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 17 10:07:02 UTC 2023	running	job `2492` is running
Dec 17 10:30:26 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2492.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1702808961.tar.gz` size: 32 MiB (34427930 bytes) entries: 2409 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `FLAC/1.4.2-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `GMP/6.2.1-GCCcore-12.3.0.lua` `GSL/2.7-GCC-12.3.0.lua` `LAME/3.100-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `libxslt/1.1.38-GCCcore-12.3.0.lua` `LittleCMS/2.15-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `UDUNITS/2.2.28-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `FLAC/1.4.2-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `GMP/6.2.1-GCCcore-12.3.0` `GSL/2.7-GCC-12.3.0` `LAME/3.100-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `libxslt/1.1.38-GCCcore-12.3.0` `LittleCMS/2.15-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `UDUNITS/2.2.28-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 17 10:30:26 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-17T09:59:05Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_428/2493

date	job status	comment
Dec 17 09:59:05 UTC 2023	submitted	job id `2493` awaits release by job manager
Dec 17 09:59:30 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 17 10:07:04 UTC 2023	running	job `2493` is running
Dec 17 10:25:09 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2493.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1702808645.tar.gz` size: 32 MiB (34487291 bytes) entries: 2409 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `FLAC/1.4.2-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `GMP/6.2.1-GCCcore-12.3.0.lua` `GSL/2.7-GCC-12.3.0.lua` `LAME/3.100-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `libxslt/1.1.38-GCCcore-12.3.0.lua` `LittleCMS/2.15-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `UDUNITS/2.2.28-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `FLAC/1.4.2-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `GMP/6.2.1-GCCcore-12.3.0` `GSL/2.7-GCC-12.3.0` `LAME/3.100-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `libxslt/1.1.38-GCCcore-12.3.0` `LittleCMS/2.15-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `UDUNITS/2.2.28-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 17 10:25:09 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-17T09:59:07Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_428/2494

date	job status	comment
Dec 17 09:59:06 UTC 2023	submitted	job id `2494` awaits release by job manager
Dec 17 09:59:22 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 17 10:05:49 UTC 2023	running	job `2494` is running
Dec 17 10:26:13 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2494.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1702808738.tar.gz` size: 32 MiB (34425586 bytes) entries: 2409 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `FLAC/1.4.2-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `GMP/6.2.1-GCCcore-12.3.0.lua` `GSL/2.7-GCC-12.3.0.lua` `LAME/3.100-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `libxslt/1.1.38-GCCcore-12.3.0.lua` `LittleCMS/2.15-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `UDUNITS/2.2.28-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `FLAC/1.4.2-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `GMP/6.2.1-GCCcore-12.3.0` `GSL/2.7-GCC-12.3.0` `LAME/3.100-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `libxslt/1.1.38-GCCcore-12.3.0` `LittleCMS/2.15-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `UDUNITS/2.2.28-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 17 10:26:13 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-17T09:59:08Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_428/2495

date	job status	comment
Dec 17 09:59:07 UTC 2023	submitted	job id `2495` awaits release by job manager
Dec 17 09:59:24 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 17 10:05:51 UTC 2023	running	job `2495` is running
Dec 17 10:21:50 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2495.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1702808419.tar.gz` size: 32 MiB (34426917 bytes) entries: 2409 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `FLAC/1.4.2-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `GMP/6.2.1-GCCcore-12.3.0.lua` `GSL/2.7-GCC-12.3.0.lua` `LAME/3.100-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `libxslt/1.1.38-GCCcore-12.3.0.lua` `LittleCMS/2.15-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `UDUNITS/2.2.28-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `FLAC/1.4.2-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `GMP/6.2.1-GCCcore-12.3.0` `GSL/2.7-GCC-12.3.0` `LAME/3.100-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `libxslt/1.1.38-GCCcore-12.3.0` `LittleCMS/2.15-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `UDUNITS/2.2.28-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 17 10:21:50 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-17T09:59:10Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_428/2496

date	job status	comment
Dec 17 09:59:09 UTC 2023	submitted	job id `2496` awaits release by job manager
Dec 17 09:59:17 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 17 10:03:36 UTC 2023	running	job `2496` is running
Dec 17 10:22:56 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2496.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1702808521.tar.gz` size: 31 MiB (33530260 bytes) entries: 2409 modules under 2023.06/software/linux/aarch64/generic/modules/all `FLAC/1.4.2-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `GMP/6.2.1-GCCcore-12.3.0.lua` `GSL/2.7-GCC-12.3.0.lua` `LAME/3.100-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `libxslt/1.1.38-GCCcore-12.3.0.lua` `LittleCMS/2.15-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `UDUNITS/2.2.28-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `FLAC/1.4.2-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `GMP/6.2.1-GCCcore-12.3.0` `GSL/2.7-GCC-12.3.0` `LAME/3.100-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `libxslt/1.1.38-GCCcore-12.3.0` `LittleCMS/2.15-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `UDUNITS/2.2.28-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 17 10:22:56 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-17T09:59:11Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_428/2497

date	job status	comment
Dec 17 09:59:10 UTC 2023	submitted	job id `2497` awaits release by job manager
Dec 17 09:59:18 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 17 10:03:38 UTC 2023	running	job `2497` is running
Dec 17 10:24:03 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2497.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1702808542.tar.gz` size: 32 MiB (33578424 bytes) entries: 2409 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `FLAC/1.4.2-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `GMP/6.2.1-GCCcore-12.3.0.lua` `GSL/2.7-GCC-12.3.0.lua` `LAME/3.100-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `libxslt/1.1.38-GCCcore-12.3.0.lua` `LittleCMS/2.15-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `UDUNITS/2.2.28-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `FLAC/1.4.2-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `GMP/6.2.1-GCCcore-12.3.0` `GSL/2.7-GCC-12.3.0` `LAME/3.100-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `libxslt/1.1.38-GCCcore-12.3.0` `LittleCMS/2.15-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `UDUNITS/2.2.28-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 17 10:24:03 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-17T09:59:12Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_428/2498

date	job status	comment
Dec 17 09:59:11 UTC 2023	submitted	job id `2498` awaits release by job manager
Dec 17 09:59:20 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 17 10:03:39 UTC 2023	running	job `2498` is running
Dec 17 10:19:35 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2498.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1702808304.tar.gz` size: 32 MiB (33630446 bytes) entries: 2409 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `FLAC/1.4.2-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `GMP/6.2.1-GCCcore-12.3.0.lua` `GSL/2.7-GCC-12.3.0.lua` `LAME/3.100-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `libxslt/1.1.38-GCCcore-12.3.0.lua` `LittleCMS/2.15-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `UDUNITS/2.2.28-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `FLAC/1.4.2-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `GMP/6.2.1-GCCcore-12.3.0` `GSL/2.7-GCC-12.3.0` `LAME/3.100-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `libxslt/1.1.38-GCCcore-12.3.0` `LittleCMS/2.15-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `UDUNITS/2.2.28-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 17 10:19:35 UTC 2023	test result	(no tests yet)

trz42 · 2023-12-17T17:13:52Z

bot: build arch:x86_64/amd/zen3 repo:eessi.io-2023.06-software

eessi-bot · 2023-12-17T17:13:55Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build arch:x86_64/amd/zen3 repo:eessi.io-2023.06-software from trz42
- expanded format: build architecture:x86_64/amd/zen3 repository:eessi.io-2023.06-software
handling command build architecture:x86_64/amd/zen3 repository:eessi.io-2023.06-software resulted in:
- submitted job 2499, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)

eessi-bot · 2023-12-17T17:13:59Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_428/2499

date	job status	comment
Dec 17 17:13:58 UTC 2023	submitted	job id `2499` awaits release by job manager
Dec 17 17:14:55 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 17 17:18:57 UTC 2023	running	job `2499` is running
Dec 17 17:35:14 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2499.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1702834459.tar.gz` size: 33 MiB (34832205 bytes) entries: 2437 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `FLAC/1.4.2-GCCcore-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `GMP/6.2.1-GCCcore-12.3.0.lua` `GSL/2.7-GCC-12.3.0.lua` `LAME/3.100-GCCcore-12.3.0.lua` `LERC/4.0.0-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `libxslt/1.1.38-GCCcore-12.3.0.lua` `LittleCMS/2.15-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `UDUNITS/2.2.28-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `FLAC/1.4.2-GCCcore-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `GMP/6.2.1-GCCcore-12.3.0` `GSL/2.7-GCC-12.3.0` `LAME/3.100-GCCcore-12.3.0` `LERC/4.0.0-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `libxslt/1.1.38-GCCcore-12.3.0` `LittleCMS/2.15-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `UDUNITS/2.2.28-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 17 17:35:14 UTC 2023	test result	(no tests yet)

trz42 · 2023-12-18T10:37:21Z

bot: build arch:x86_64/amd/zen3 repo:eessi.io-2023.06-software

eessi-bot · 2023-12-18T10:37:26Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build arch:x86_64/amd/zen3 repo:eessi.io-2023.06-software from trz42
- expanded format: build architecture:x86_64/amd/zen3 repository:eessi.io-2023.06-software
handling command build architecture:x86_64/amd/zen3 repository:eessi.io-2023.06-software resulted in:
- submitted job 2564, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)

eessi-bot · 2023-12-18T10:37:31Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_428/2564

date	job status	comment
Dec 18 10:37:30 UTC 2023	submitted	job id `2564` awaits release by job manager
Dec 18 10:37:55 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 18 10:39:01 UTC 2023	running	job `2564` is running
Dec 18 11:10:46 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2564.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1702897760.tar.gz` size: 60 MiB (62968028 bytes) entries: 6186 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `ATK/2.38.0-GCCcore-12.3.0.lua` `FLAC/1.4.2-GCCcore-12.3.0.lua` `Gdk-Pixbuf/2.42.10-GCCcore-12.3.0.lua` `GEOS/3.12.0-GCC-12.3.0.lua` `GLPK/5.0-GCCcore-12.3.0.lua` `GMP/6.2.1-GCCcore-12.3.0.lua` `GSL/2.7-GCC-12.3.0.lua` `LAME/3.100-GCCcore-12.3.0.lua` `LERC/4.0.0-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `libxslt/1.1.38-GCCcore-12.3.0.lua` `LittleCMS/2.15-GCCcore-12.3.0.lua` `MPFR/4.2.0-GCCcore-12.3.0.lua` `netCDF/4.9.2-gompi-2023a.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `Pango/1.50.14-GCCcore-12.3.0.lua` `PostgreSQL/16.1-GCCcore-12.3.0.lua` `UDUNITS/2.2.28-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `ATK/2.38.0-GCCcore-12.3.0` `FLAC/1.4.2-GCCcore-12.3.0` `Gdk-Pixbuf/2.42.10-GCCcore-12.3.0` `GEOS/3.12.0-GCC-12.3.0` `GLPK/5.0-GCCcore-12.3.0` `GMP/6.2.1-GCCcore-12.3.0` `GSL/2.7-GCC-12.3.0` `LAME/3.100-GCCcore-12.3.0` `LERC/4.0.0-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `libxslt/1.1.38-GCCcore-12.3.0` `LittleCMS/2.15-GCCcore-12.3.0` `MPFR/4.2.0-GCCcore-12.3.0` `netCDF/4.9.2-gompi-2023a` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `Pango/1.50.14-GCCcore-12.3.0` `PostgreSQL/16.1-GCCcore-12.3.0` `UDUNITS/2.2.28-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 18 11:10:46 UTC 2023	test result	(no tests yet)

bedroge · 2023-12-21T13:40:48Z

I've spent quite a lot of time on debugging the issue with at-spi2-core, and ultimately found the cause in its dependency GObject-Introspection. The build of at-spi2-core calls g-ir-scanner via Meson's https://mesonbuild.com/Gnome-module.html#gnomegenerate_gir (see https://gitlab.gnome.org/GNOME/at-spi2-core/-/blob/AT_SPI2_CORE_2_49_91/atspi/meson.build?ref_type=tags#L128). This tool compiles some binary, and checks with ldd afterwards if the shared libraries of that binary can be found. In order to do that, it sets LD_LIBRARY_PATH to directories that include dependencies (here: https://gitlab.gnome.org/GNOME/gobject-introspection/-/blob/1.76.1/giscanner/ccompiler.py#L214), and also to $EPREFIX/usr/lib64. The latter somehow breaks ldd in our build container, resulting in errors like:

/bin/bash: /cvmfs/software.eessi.io/versions/2023.06/compat/linux/x86_64/usr/lib64/libtinfo.so.6: no version information available (required by /bin/bash)
/bin/bash: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.33' not found (required by /cvmfs/software.eessi.io/versions/2023.06/compat/linux/x86_64/usr/lib64/libtinfo.so.6)

I think this is because ldd is actually a bash script, which has a shebang that points to the host (not sure why Gentoo does not eprefixify this to the bash of the Prefix installation); by setting $LD_LIBRARY_PATH, this bash is picking up libraries from Prefix. I tried manually eprefixifying ldd in our container (and let is use the correct bash), and for some reason that did solve it interactively, but not when installing with EasyBuild.

As an alternative, we could patch the meson.build of at-spi2-core, and let it instruct g-ir-scanner to use some other variable instead of $LD_LIBRARY_PATH by setting --lib-dirs-envvar to some dummy variable. I've tested this approach by adding the following hook, which adds the option right below this line https://gitlab.gnome.org/GNOME/at-spi2-core/-/blob/AT_SPI2_CORE_2_49_91/atspi/meson.build?ref_type=tags#L119 (and only if EasyBuild is configured to filter $LD_LIBRARY_PATH):

def pre_configure_hook_atspi2core_filter_ld_library_path(self, *args, **kwargs):
    """
    Pre-configure hook for at-spi2-core: don't set LD_LIBRARY_PATH when calling g-ir-scanner
    """
    if self.name == 'at-spi2-core':
        if build_option('filter_env_vars') and 'LD_LIBRARY_PATH' in build_option('filter_env_vars'):
            self.cfg.update('preconfigopts', 'sed -i "s/gir_extra_args = \[/gir_extra_args = \[\\n  \'--lib-dirs-envvar=FILTER_LD_LIBRARY_PATH\',/g" %(start_dir)s/atspi/meson.build && ')
    else:
        raise EasyBuildError("at-spi2-core-specific hook triggered for non-at-spi2-core easyconfig?!")

Not sure if this is the cleanest way to do it, and the same issue could potentially pop up for other tools using GObject-Introspection, but at least it allowed me to build at-spi2-core in our build container.

bedroge · 2023-12-21T13:49:48Z

If you want to reproduce the issue, you can do the following:

cd /path/to/software-layer
./eessi_container.sh
/cvmfs/software.eessi.io/versions/2023.06/compat/linux/$(uname -m)/startprefix
env LD_LIBRARY_PATH=/cvmfs/software.eessi.io/versions/2023.06/compat/linux/x86_64/usr/lib64 ldd --version

which should result in:

/bin/bash: /cvmfs/software.eessi.io/versions/2023.06/compat/linux/x86_64/usr/lib64/libtinfo.so.6: no version information available (required by /bin/bash)
/bin/bash: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.33' not found (required by /cvmfs/software.eessi.io/versions/2023.06/compat/linux/x86_64/usr/lib64/libtinfo.so.6)

ocaisa · 2023-12-21T15:13:41Z

Good work @bedroge , this is what lies behind #196

bedroge · 2024-01-16T14:27:33Z

The issue with at-spi2-core is solved in #454 (which is currently getting deployed). @trz42 could you move R to the EB 4.9.0 file? That version contains the fixes for MPFR and LERC, so we can get rid of those.

bedroge · 2024-01-19T14:11:50Z

@trz42 I've made a PR to your branch that syncs this PR with the main 2023.06-software.eessi.io branch, resolved the merge conflict, removes LERC and MPFR (as those fixes are included with EB 4.9.0), and moves R-bundle-CRAN to the EB 4.9.0 easystack file: https://github.com/trz42/software-layer/pull/68/files.

Sync with 2023.06-software.eessi.io branch and move R-bundle-CRAN to EB 4.9.0 2023a easystack

eessi-bot · 2024-04-04T15:05:36Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9027

date	job status	comment
Apr 04 15:05:35 UTC 2024	submitted	job id `9027` awaits release by job manager
Apr 04 15:06:35 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 15:14:20 UTC 2024	running	job `9027` is running
Apr 04 20:55:07 UTC 2024	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job9027.result` does not exist in job directory or reading it failed. No artefacts were found/reported.
Apr 04 20:55:07 UTC 2024	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job9027.test` does not exist in job directory or reading it failed.

eessi-bot · 2024-04-04T15:05:40Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9028

date	job status	comment
Apr 04 15:05:39 UTC 2024	submitted	job id `9028` awaits release by job manager
Apr 04 15:06:30 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 15:13:06 UTC 2024	running	job `9028` is running
Apr 04 20:55:04 UTC 2024	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job9028.result` does not exist in job directory or reading it failed. No artefacts were found/reported.
Apr 04 20:55:04 UTC 2024	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job9028.test` does not exist in job directory or reading it failed.

eessi-bot · 2024-04-04T15:05:44Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9029

date	job status	comment
Apr 04 15:05:43 UTC 2024	submitted	job id `9029` awaits release by job manager
Apr 04 15:06:32 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 15:13:09 UTC 2024	running	job `9029` is running
Apr 04 20:55:05 UTC 2024	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job9029.result` does not exist in job directory or reading it failed. No artefacts were found/reported.
Apr 04 20:55:05 UTC 2024	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job9029.test` does not exist in job directory or reading it failed.

eessi-bot · 2024-04-04T15:05:48Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9030

date	job status	comment
Apr 04 15:05:47 UTC 2024	submitted	job id `9030` awaits release by job manager
Apr 04 15:06:38 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 15:15:33 UTC 2024	running	job `9030` is running
Apr 04 20:55:08 UTC 2024	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job9030.result` does not exist in job directory or reading it failed. No artefacts were found/reported.
Apr 04 20:55:08 UTC 2024	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job9030.test` does not exist in job directory or reading it failed.

eessi-bot · 2024-04-04T15:05:51Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9031

date	job status	comment
Apr 04 15:05:51 UTC 2024	submitted	job id `9031` awaits release by job manager
Apr 04 15:06:40 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 15:15:36 UTC 2024	running	job `9031` is running
Apr 04 20:55:09 UTC 2024	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job9031.result` does not exist in job directory or reading it failed. No artefacts were found/reported.
Apr 04 20:55:09 UTC 2024	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job9031.test` does not exist in job directory or reading it failed.

bedroge · 2024-04-04T20:53:38Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot · 2024-04-04T20:53:41Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 9043, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 9044, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 9045, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 9046, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 9047, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 9048, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 9049, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 9050, for details & status see {2023.06}[foss/2023a] R-bundle-CRAN 2023.12 #428 (comment)

eessi-bot · 2024-04-04T20:53:45Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9043

date	job status	comment
Apr 04 20:53:44 UTC 2024	submitted	job id `9043` awaits release by job manager
Apr 04 20:54:35 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 20:56:15 UTC 2024	running	job `9043` is running
Apr 05 04:03:50 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9043.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1712289037.tar.gz` size: 1668 MiB (1749991421 bytes) entries: 76511 modules under 2023.06/software/linux/aarch64/generic/modules/all `Armadillo/12.6.2-foss-2023a.lua` `arpack-ng/3.9.0-foss-2023a.lua` `Brunsli/0.1-GCCcore-12.3.0.lua` `CFITSIO/4.3.0-GCCcore-12.3.0.lua` `FLAC/1.4.2-GCCcore-12.3.0.lua` `GDAL/3.7.1-foss-2023a.lua` `GEOS/3.12.0-GCC-12.3.0.lua` `HDF/4.2.16-2-GCCcore-12.3.0.lua` `Imath/3.1.7-GCCcore-12.3.0.lua` `json-c/0.16-GCCcore-12.3.0.lua` `LERC/4.0.0-GCCcore-12.3.0.lua` `libgeotiff/1.7.1-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libtirpc/1.3.3-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `OpenEXR/3.1.7-GCCcore-12.3.0.lua` `PostgreSQL/16.1-GCCcore-12.3.0.lua` `R-bundle-CRAN/2023.12-foss-2023a.lua` `SWIG/4.1.1-GCCcore-12.3.0.lua` `Xerces-C++/3.2.4-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `Armadillo/12.6.2-foss-2023a` `arpack-ng/3.9.0-foss-2023a` `Brunsli/0.1-GCCcore-12.3.0` `CFITSIO/4.3.0-GCCcore-12.3.0` `FLAC/1.4.2-GCCcore-12.3.0` `GDAL/3.7.1-foss-2023a` `GEOS/3.12.0-GCC-12.3.0` `HDF/4.2.16-2-GCCcore-12.3.0` `Imath/3.1.7-GCCcore-12.3.0` `json-c/0.16-GCCcore-12.3.0` `LERC/4.0.0-GCCcore-12.3.0` `libgeotiff/1.7.1-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libtirpc/1.3.3-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `OpenEXR/3.1.7-GCCcore-12.3.0` `PostgreSQL/16.1-GCCcore-12.3.0` `R-bundle-CRAN/2023.12-foss-2023a` `SWIG/4.1.1-GCCcore-12.3.0` `Xerces-C++/3.2.4-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Apr 05 04:03:50 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9043.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 05 06:58:27 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1712289037.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-04T20:53:48Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9044

date	job status	comment
Apr 04 20:53:47 UTC 2024	submitted	job id `9044` awaits release by job manager
Apr 04 20:54:37 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 20:56:19 UTC 2024	running	job `9044` is running
Apr 05 04:13:54 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9044.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1712289680.tar.gz` size: 1669 MiB (1750690416 bytes) entries: 76511 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `Armadillo/12.6.2-foss-2023a.lua` `arpack-ng/3.9.0-foss-2023a.lua` `Brunsli/0.1-GCCcore-12.3.0.lua` `CFITSIO/4.3.0-GCCcore-12.3.0.lua` `FLAC/1.4.2-GCCcore-12.3.0.lua` `GDAL/3.7.1-foss-2023a.lua` `GEOS/3.12.0-GCC-12.3.0.lua` `HDF/4.2.16-2-GCCcore-12.3.0.lua` `Imath/3.1.7-GCCcore-12.3.0.lua` `json-c/0.16-GCCcore-12.3.0.lua` `LERC/4.0.0-GCCcore-12.3.0.lua` `libgeotiff/1.7.1-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libtirpc/1.3.3-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `OpenEXR/3.1.7-GCCcore-12.3.0.lua` `PostgreSQL/16.1-GCCcore-12.3.0.lua` `R-bundle-CRAN/2023.12-foss-2023a.lua` `SWIG/4.1.1-GCCcore-12.3.0.lua` `Xerces-C++/3.2.4-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `Armadillo/12.6.2-foss-2023a` `arpack-ng/3.9.0-foss-2023a` `Brunsli/0.1-GCCcore-12.3.0` `CFITSIO/4.3.0-GCCcore-12.3.0` `FLAC/1.4.2-GCCcore-12.3.0` `GDAL/3.7.1-foss-2023a` `GEOS/3.12.0-GCC-12.3.0` `HDF/4.2.16-2-GCCcore-12.3.0` `Imath/3.1.7-GCCcore-12.3.0` `json-c/0.16-GCCcore-12.3.0` `LERC/4.0.0-GCCcore-12.3.0` `libgeotiff/1.7.1-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libtirpc/1.3.3-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `OpenEXR/3.1.7-GCCcore-12.3.0` `PostgreSQL/16.1-GCCcore-12.3.0` `R-bundle-CRAN/2023.12-foss-2023a` `SWIG/4.1.1-GCCcore-12.3.0` `Xerces-C++/3.2.4-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/aarch64/neoverse_n1 no other files in tarball
Apr 05 04:13:54 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9044.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 05 06:59:06 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1712289680.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-04T20:53:52Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9045

date	job status	comment
Apr 04 20:53:51 UTC 2024	submitted	job id `9045` awaits release by job manager
Apr 04 20:54:40 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 20:59:09 UTC 2024	running	job `9045` is running
Apr 05 02:04:58 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9045.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1712282143.tar.gz` size: 1669 MiB (1751011594 bytes) entries: 76511 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `Armadillo/12.6.2-foss-2023a.lua` `arpack-ng/3.9.0-foss-2023a.lua` `Brunsli/0.1-GCCcore-12.3.0.lua` `CFITSIO/4.3.0-GCCcore-12.3.0.lua` `FLAC/1.4.2-GCCcore-12.3.0.lua` `GDAL/3.7.1-foss-2023a.lua` `GEOS/3.12.0-GCC-12.3.0.lua` `HDF/4.2.16-2-GCCcore-12.3.0.lua` `Imath/3.1.7-GCCcore-12.3.0.lua` `json-c/0.16-GCCcore-12.3.0.lua` `LERC/4.0.0-GCCcore-12.3.0.lua` `libgeotiff/1.7.1-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libtirpc/1.3.3-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `OpenEXR/3.1.7-GCCcore-12.3.0.lua` `PostgreSQL/16.1-GCCcore-12.3.0.lua` `R-bundle-CRAN/2023.12-foss-2023a.lua` `SWIG/4.1.1-GCCcore-12.3.0.lua` `Xerces-C++/3.2.4-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `Armadillo/12.6.2-foss-2023a` `arpack-ng/3.9.0-foss-2023a` `Brunsli/0.1-GCCcore-12.3.0` `CFITSIO/4.3.0-GCCcore-12.3.0` `FLAC/1.4.2-GCCcore-12.3.0` `GDAL/3.7.1-foss-2023a` `GEOS/3.12.0-GCC-12.3.0` `HDF/4.2.16-2-GCCcore-12.3.0` `Imath/3.1.7-GCCcore-12.3.0` `json-c/0.16-GCCcore-12.3.0` `LERC/4.0.0-GCCcore-12.3.0` `libgeotiff/1.7.1-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libtirpc/1.3.3-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `OpenEXR/3.1.7-GCCcore-12.3.0` `PostgreSQL/16.1-GCCcore-12.3.0` `R-bundle-CRAN/2023.12-foss-2023a` `SWIG/4.1.1-GCCcore-12.3.0` `Xerces-C++/3.2.4-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/aarch64/neoverse_v1 no other files in tarball
Apr 05 02:04:58 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9045.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 05 06:59:48 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1712282143.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-04T20:53:55Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9046

date	job status	comment
Apr 04 20:53:54 UTC 2024	submitted	job id `9046` awaits release by job manager
Apr 04 20:54:48 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 20:56:32 UTC 2024	running	job `9046` is running
Apr 05 05:26:46 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9046.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1712293688.tar.gz` size: 1678 MiB (1760228807 bytes) entries: 76511 modules under 2023.06/software/linux/x86_64/generic/modules/all `Armadillo/12.6.2-foss-2023a.lua` `arpack-ng/3.9.0-foss-2023a.lua` `Brunsli/0.1-GCCcore-12.3.0.lua` `CFITSIO/4.3.0-GCCcore-12.3.0.lua` `FLAC/1.4.2-GCCcore-12.3.0.lua` `GDAL/3.7.1-foss-2023a.lua` `GEOS/3.12.0-GCC-12.3.0.lua` `HDF/4.2.16-2-GCCcore-12.3.0.lua` `Imath/3.1.7-GCCcore-12.3.0.lua` `json-c/0.16-GCCcore-12.3.0.lua` `LERC/4.0.0-GCCcore-12.3.0.lua` `libgeotiff/1.7.1-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libtirpc/1.3.3-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `OpenEXR/3.1.7-GCCcore-12.3.0.lua` `PostgreSQL/16.1-GCCcore-12.3.0.lua` `R-bundle-CRAN/2023.12-foss-2023a.lua` `SWIG/4.1.1-GCCcore-12.3.0.lua` `Xerces-C++/3.2.4-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `Armadillo/12.6.2-foss-2023a` `arpack-ng/3.9.0-foss-2023a` `Brunsli/0.1-GCCcore-12.3.0` `CFITSIO/4.3.0-GCCcore-12.3.0` `FLAC/1.4.2-GCCcore-12.3.0` `GDAL/3.7.1-foss-2023a` `GEOS/3.12.0-GCC-12.3.0` `HDF/4.2.16-2-GCCcore-12.3.0` `Imath/3.1.7-GCCcore-12.3.0` `json-c/0.16-GCCcore-12.3.0` `LERC/4.0.0-GCCcore-12.3.0` `libgeotiff/1.7.1-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libtirpc/1.3.3-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `OpenEXR/3.1.7-GCCcore-12.3.0` `PostgreSQL/16.1-GCCcore-12.3.0` `R-bundle-CRAN/2023.12-foss-2023a` `SWIG/4.1.1-GCCcore-12.3.0` `Xerces-C++/3.2.4-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Apr 05 05:26:46 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9046.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 05 06:55:47 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1712293688.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-04T20:53:59Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9047

date	job status	comment
Apr 04 20:53:58 UTC 2024	submitted	job id `9047` awaits release by job manager
Apr 04 20:54:43 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 20:56:24 UTC 2024	running	job `9047` is running
Apr 05 05:45:28 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9047.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1712294679.tar.gz` size: 1682 MiB (1763940715 bytes) entries: 76511 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `Armadillo/12.6.2-foss-2023a.lua` `arpack-ng/3.9.0-foss-2023a.lua` `Brunsli/0.1-GCCcore-12.3.0.lua` `CFITSIO/4.3.0-GCCcore-12.3.0.lua` `FLAC/1.4.2-GCCcore-12.3.0.lua` `GDAL/3.7.1-foss-2023a.lua` `GEOS/3.12.0-GCC-12.3.0.lua` `HDF/4.2.16-2-GCCcore-12.3.0.lua` `Imath/3.1.7-GCCcore-12.3.0.lua` `json-c/0.16-GCCcore-12.3.0.lua` `LERC/4.0.0-GCCcore-12.3.0.lua` `libgeotiff/1.7.1-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libtirpc/1.3.3-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `OpenEXR/3.1.7-GCCcore-12.3.0.lua` `PostgreSQL/16.1-GCCcore-12.3.0.lua` `R-bundle-CRAN/2023.12-foss-2023a.lua` `SWIG/4.1.1-GCCcore-12.3.0.lua` `Xerces-C++/3.2.4-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `Armadillo/12.6.2-foss-2023a` `arpack-ng/3.9.0-foss-2023a` `Brunsli/0.1-GCCcore-12.3.0` `CFITSIO/4.3.0-GCCcore-12.3.0` `FLAC/1.4.2-GCCcore-12.3.0` `GDAL/3.7.1-foss-2023a` `GEOS/3.12.0-GCC-12.3.0` `HDF/4.2.16-2-GCCcore-12.3.0` `Imath/3.1.7-GCCcore-12.3.0` `json-c/0.16-GCCcore-12.3.0` `LERC/4.0.0-GCCcore-12.3.0` `libgeotiff/1.7.1-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libtirpc/1.3.3-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `OpenEXR/3.1.7-GCCcore-12.3.0` `PostgreSQL/16.1-GCCcore-12.3.0` `R-bundle-CRAN/2023.12-foss-2023a` `SWIG/4.1.1-GCCcore-12.3.0` `Xerces-C++/3.2.4-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Apr 05 05:45:28 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9047.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 05 06:56:30 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1712294679.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-04T20:54:02Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9048

date	job status	comment
Apr 04 20:54:02 UTC 2024	submitted	job id `9048` awaits release by job manager
Apr 04 20:54:46 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 20:56:28 UTC 2024	running	job `9048` is running
Apr 05 03:25:12 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9048.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1712286668.tar.gz` size: 1681 MiB (1763621601 bytes) entries: 76511 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Armadillo/12.6.2-foss-2023a.lua` `arpack-ng/3.9.0-foss-2023a.lua` `Brunsli/0.1-GCCcore-12.3.0.lua` `CFITSIO/4.3.0-GCCcore-12.3.0.lua` `FLAC/1.4.2-GCCcore-12.3.0.lua` `GDAL/3.7.1-foss-2023a.lua` `GEOS/3.12.0-GCC-12.3.0.lua` `HDF/4.2.16-2-GCCcore-12.3.0.lua` `Imath/3.1.7-GCCcore-12.3.0.lua` `json-c/0.16-GCCcore-12.3.0.lua` `LERC/4.0.0-GCCcore-12.3.0.lua` `libgeotiff/1.7.1-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libtirpc/1.3.3-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `OpenEXR/3.1.7-GCCcore-12.3.0.lua` `PostgreSQL/16.1-GCCcore-12.3.0.lua` `R-bundle-CRAN/2023.12-foss-2023a.lua` `SWIG/4.1.1-GCCcore-12.3.0.lua` `Xerces-C++/3.2.4-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Armadillo/12.6.2-foss-2023a` `arpack-ng/3.9.0-foss-2023a` `Brunsli/0.1-GCCcore-12.3.0` `CFITSIO/4.3.0-GCCcore-12.3.0` `FLAC/1.4.2-GCCcore-12.3.0` `GDAL/3.7.1-foss-2023a` `GEOS/3.12.0-GCC-12.3.0` `HDF/4.2.16-2-GCCcore-12.3.0` `Imath/3.1.7-GCCcore-12.3.0` `json-c/0.16-GCCcore-12.3.0` `LERC/4.0.0-GCCcore-12.3.0` `libgeotiff/1.7.1-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libtirpc/1.3.3-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `OpenEXR/3.1.7-GCCcore-12.3.0` `PostgreSQL/16.1-GCCcore-12.3.0` `R-bundle-CRAN/2023.12-foss-2023a` `SWIG/4.1.1-GCCcore-12.3.0` `Xerces-C++/3.2.4-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
Apr 05 03:25:12 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9048.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 05 06:55:07 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1712286668.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-04T20:54:06Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9049

date	job status	comment
Apr 04 20:54:06 UTC 2024	submitted	job id `9049` awaits release by job manager
Apr 04 20:54:51 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 20:56:35 UTC 2024	running	job `9049` is running
Apr 05 05:32:04 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9049.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1712294036.tar.gz` size: 1682 MiB (1764337121 bytes) entries: 76511 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `Armadillo/12.6.2-foss-2023a.lua` `arpack-ng/3.9.0-foss-2023a.lua` `Brunsli/0.1-GCCcore-12.3.0.lua` `CFITSIO/4.3.0-GCCcore-12.3.0.lua` `FLAC/1.4.2-GCCcore-12.3.0.lua` `GDAL/3.7.1-foss-2023a.lua` `GEOS/3.12.0-GCC-12.3.0.lua` `HDF/4.2.16-2-GCCcore-12.3.0.lua` `Imath/3.1.7-GCCcore-12.3.0.lua` `json-c/0.16-GCCcore-12.3.0.lua` `LERC/4.0.0-GCCcore-12.3.0.lua` `libgeotiff/1.7.1-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libtirpc/1.3.3-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `OpenEXR/3.1.7-GCCcore-12.3.0.lua` `PostgreSQL/16.1-GCCcore-12.3.0.lua` `R-bundle-CRAN/2023.12-foss-2023a.lua` `SWIG/4.1.1-GCCcore-12.3.0.lua` `Xerces-C++/3.2.4-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `Armadillo/12.6.2-foss-2023a` `arpack-ng/3.9.0-foss-2023a` `Brunsli/0.1-GCCcore-12.3.0` `CFITSIO/4.3.0-GCCcore-12.3.0` `FLAC/1.4.2-GCCcore-12.3.0` `GDAL/3.7.1-foss-2023a` `GEOS/3.12.0-GCC-12.3.0` `HDF/4.2.16-2-GCCcore-12.3.0` `Imath/3.1.7-GCCcore-12.3.0` `json-c/0.16-GCCcore-12.3.0` `LERC/4.0.0-GCCcore-12.3.0` `libgeotiff/1.7.1-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libtirpc/1.3.3-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `OpenEXR/3.1.7-GCCcore-12.3.0` `PostgreSQL/16.1-GCCcore-12.3.0` `R-bundle-CRAN/2023.12-foss-2023a` `SWIG/4.1.1-GCCcore-12.3.0` `Xerces-C++/3.2.4-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/intel/haswell no other files in tarball
Apr 05 05:32:04 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9049.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 05 06:57:11 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1712294036.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-04T20:54:10Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_428/9050

date	job status	comment
Apr 04 20:54:09 UTC 2024	submitted	job id `9050` awaits release by job manager
Apr 04 20:54:53 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 04 20:56:39 UTC 2024	running	job `9050` is running
Apr 05 04:02:42 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9050.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1712288775.tar.gz` size: 1682 MiB (1764729103 bytes) entries: 76511 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `Armadillo/12.6.2-foss-2023a.lua` `arpack-ng/3.9.0-foss-2023a.lua` `Brunsli/0.1-GCCcore-12.3.0.lua` `CFITSIO/4.3.0-GCCcore-12.3.0.lua` `FLAC/1.4.2-GCCcore-12.3.0.lua` `GDAL/3.7.1-foss-2023a.lua` `GEOS/3.12.0-GCC-12.3.0.lua` `HDF/4.2.16-2-GCCcore-12.3.0.lua` `Imath/3.1.7-GCCcore-12.3.0.lua` `json-c/0.16-GCCcore-12.3.0.lua` `LERC/4.0.0-GCCcore-12.3.0.lua` `libgeotiff/1.7.1-GCCcore-12.3.0.lua` `libogg/1.3.5-GCCcore-12.3.0.lua` `libopus/1.4-GCCcore-12.3.0.lua` `libsndfile/1.2.2-GCCcore-12.3.0.lua` `libtirpc/1.3.3-GCCcore-12.3.0.lua` `libvorbis/1.3.7-GCCcore-12.3.0.lua` `nettle/3.9.1-GCCcore-12.3.0.lua` `NLopt/2.7.1-GCCcore-12.3.0.lua` `OpenEXR/3.1.7-GCCcore-12.3.0.lua` `PostgreSQL/16.1-GCCcore-12.3.0.lua` `R-bundle-CRAN/2023.12-foss-2023a.lua` `SWIG/4.1.1-GCCcore-12.3.0.lua` `Xerces-C++/3.2.4-GCCcore-12.3.0.lua` `Xvfb/21.1.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `Armadillo/12.6.2-foss-2023a` `arpack-ng/3.9.0-foss-2023a` `Brunsli/0.1-GCCcore-12.3.0` `CFITSIO/4.3.0-GCCcore-12.3.0` `FLAC/1.4.2-GCCcore-12.3.0` `GDAL/3.7.1-foss-2023a` `GEOS/3.12.0-GCC-12.3.0` `HDF/4.2.16-2-GCCcore-12.3.0` `Imath/3.1.7-GCCcore-12.3.0` `json-c/0.16-GCCcore-12.3.0` `LERC/4.0.0-GCCcore-12.3.0` `libgeotiff/1.7.1-GCCcore-12.3.0` `libogg/1.3.5-GCCcore-12.3.0` `libopus/1.4-GCCcore-12.3.0` `libsndfile/1.2.2-GCCcore-12.3.0` `libtirpc/1.3.3-GCCcore-12.3.0` `libvorbis/1.3.7-GCCcore-12.3.0` `nettle/3.9.1-GCCcore-12.3.0` `NLopt/2.7.1-GCCcore-12.3.0` `OpenEXR/3.1.7-GCCcore-12.3.0` `PostgreSQL/16.1-GCCcore-12.3.0` `R-bundle-CRAN/2023.12-foss-2023a` `SWIG/4.1.1-GCCcore-12.3.0` `Xerces-C++/3.2.4-GCCcore-12.3.0` `Xvfb/21.1.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
Apr 05 04:02:42 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9050.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 05 06:57:51 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1712288775.tar.gz` to S3 bucket succeeded

…N-2023.12-foss-2023a

boegel

lgtm

boegel · 2024-04-05T08:11:15Z

all staging PRs merged

…N-2023.12-foss-2023a

…trospection prevent GObject-Introspection from setting EB-filtered environment variables

{2023.06}[foss/2023a] R-bundle-CRAN 2023.12

363f42c

trz42 added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Dec 17, 2023

fix for LERC sanity check RPATH failure

69fe056

use patch for MPFR

34b7e85

boegel mentioned this pull request Jan 2, 2024

Issues lurking with gobject-introspection #196

Closed

bedroge mentioned this pull request Jan 16, 2024

{2023.06}[GCCcore/12.3.0] at-spi2-core 2.49.91 #454

Merged

solve merge conflict and move R bundle to 4.9.0 file

fbe462f

Merge pull request #68 from bedroge/R_fixes

aec0674

Sync with 2023.06-software.eessi.io branch and move R-bundle-CRAN to EB 4.9.0 2023a easystack

add from-pr 20238 for R-bundle-CRAN

7283d08

bedroge added the ready-to-deploy Mark a PR as ready to deploy label Apr 5, 2024

Merge branch '2023.06-software.eessi.io' into 2023.06-sw-R-bundle-CRA…

88448a5

…N-2023.12-foss-2023a

boegel added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Apr 5, 2024

boegel previously approved these changes Apr 5, 2024

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Merge branch '2023.06-software.eessi.io' into 2023.06-sw-R-bundle-CRA…

7b4d8a5

…N-2023.12-foss-2023a

bedroge dismissed boegel’s stale review via 7b4d8a5 April 5, 2024 08:29

add comment, retrigger CI

f6012f7

boegel approved these changes Apr 5, 2024

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boegel merged commit 8bc14b9 into EESSI:2023.06-software.eessi.io Apr 5, 2024

trz42 mentioned this pull request Apr 5, 2024

Syncing code-base and CVMFS repository with EESSI (April 2024) NorESSI/software-layer#294

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boegel mentioned this pull request May 12, 2024

{2023.06}[2023a] Paraver 4.11.4 #570

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TopRichard added a commit to TopRichard/software-layer that referenced this pull request Jul 23, 2024

Merge pull request EESSI#428 from TopRichard/nessi-2023.06-GObject-In…

447576b

…trospection prevent GObject-Introspection from setting EB-filtered environment variables

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