{2023.06}[foss/2022b] GDAL 3.6.2 by bedroge · Pull Request #419 · EESSI/software-layer

bedroge · 2023-12-08T21:33:37Z

Trying to work towards an R installation, this adds about half of its dependencies:

27 out of 91 required modules missing:

* GEOS/3.11.1-GCC-12.2.0 (GEOS-3.11.1-GCC-12.2.0.eb)
* PCRE/8.45-GCCcore-12.2.0 (PCRE-8.45-GCCcore-12.2.0.eb)
* jbigkit/2.1-GCCcore-12.2.0 (jbigkit-2.1-GCCcore-12.2.0.eb)
* libdeflate/1.15-GCCcore-12.2.0 (libdeflate-1.15-GCCcore-12.2.0.eb)
* LibTIFF/4.4.0-GCCcore-12.2.0 (LibTIFF-4.4.0-GCCcore-12.2.0.eb)
* googletest/1.12.1-GCCcore-12.2.0 (googletest-1.12.1-GCCcore-12.2.0.eb)
* netCDF/4.9.0-gompi-2022b (netCDF-4.9.0-gompi-2022b.eb)
* nlohmann_json/3.11.2-GCCcore-12.2.0 (nlohmann_json-3.11.2-GCCcore-12.2.0.eb)
* PROJ/9.1.1-GCCcore-12.2.0 (PROJ-9.1.1-GCCcore-12.2.0.eb)
* libgeotiff/1.7.1-GCCcore-12.2.0 (libgeotiff-1.7.1-GCCcore-12.2.0.eb)
* libtirpc/1.3.3-GCCcore-12.2.0 (libtirpc-1.3.3-GCCcore-12.2.0.eb)
* HDF/4.2.15-GCCcore-12.2.0 (HDF-4.2.15-GCCcore-12.2.0.eb)
* CFITSIO/4.2.0-GCCcore-12.2.0 (CFITSIO-4.2.0-GCCcore-12.2.0.eb)
* giflib/5.2.1-GCCcore-12.2.0 (giflib-5.2.1-GCCcore-12.2.0.eb)
* Boost/1.81.0-GCC-12.2.0 (Boost-1.81.0-GCC-12.2.0.eb)
* json-c/0.16-GCCcore-12.2.0 (json-c-0.16-GCCcore-12.2.0.eb)
* Xerces-C++/3.2.4-GCCcore-12.2.0 (Xerces-C++-3.2.4-GCCcore-12.2.0.eb)
* Imath/3.1.6-GCCcore-12.2.0 (Imath-3.1.6-GCCcore-12.2.0.eb)
* OpenEXR/3.1.5-GCCcore-12.2.0 (OpenEXR-3.1.5-GCCcore-12.2.0.eb)
* arpack-ng/3.8.0-foss-2022b (arpack-ng-3.8.0-foss-2022b.eb)
* Armadillo/11.4.3-foss-2022b (Armadillo-11.4.3-foss-2022b.eb)
* Qhull/2020.2-GCCcore-12.2.0 (Qhull-2020.2-GCCcore-12.2.0.eb)
* LERC/4.0.0-GCCcore-12.2.0 (LERC-4.0.0-GCCcore-12.2.0.eb)
* Highway/1.0.3-GCCcore-12.2.0 (Highway-1.0.3-GCCcore-12.2.0.eb)
* Brunsli/0.1-GCCcore-12.2.0 (Brunsli-0.1-GCCcore-12.2.0.eb)
* OpenJPEG/2.5.0-GCCcore-12.2.0 (OpenJPEG-2.5.0-GCCcore-12.2.0.eb)
* GDAL/3.6.2-foss-2022b (GDAL-3.6.2-foss-2022b.eb)

Let's see if this also fails on the netCDF tests...

eessi-bot · 2023-12-08T21:33:41Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

bedroge · 2023-12-08T21:34:02Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2023-12-08T21:34:06Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 2005, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 2006, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)

eessi-bot · 2023-12-08T21:34:10Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_419/2005

date	job status	comment
Dec 08 21:34:09 UTC 2023	submitted	job id `2005` awaits release by job manager
Dec 08 21:35:13 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 08 21:41:18 UTC 2023	running	job `2005` is running
Dec 09 00:06:07 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2005.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1702080144.tar.gz` size: 656 MiB (688054636 bytes) entries: 97534 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Armadillo/11.4.3-foss-2022b.lua` `arpack-ng/3.8.0-foss-2022b.lua` `Bison/3.8.2-GCCcore-12.2.0.lua` `Boost/1.81.0-GCC-12.2.0.lua` `Brotli/1.0.9-GCCcore-12.2.0.lua` `Catch2/2.13.9-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `Doxygen/1.9.5-GCCcore-12.2.0.lua` `Eigen/3.4.0-GCCcore-12.2.0.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `gfbf/2022b.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `git/2.38.1-GCCcore-12.2.0-nodocs.lua` `GMP/6.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `gzip/1.12-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `HDF5/1.14.0-gompi-2022b.lua` `hypothesis/6.68.2-GCCcore-12.2.0.lua` `ICU/72.1-GCCcore-12.2.0.lua` `Imath/3.1.6-GCCcore-12.2.0.lua` `JasPer/4.0.0-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `json-c/0.16-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `libiconv/1.17-GCCcore-12.2.0.lua` `libjpeg-turbo/2.1.4-GCCcore-12.2.0.lua` `libpng/1.6.38-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `lz4/1.9.4-GCCcore-12.2.0.lua` `Meson/0.64.0-GCCcore-12.2.0.lua` `NASM/2.15.05-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `Ninja/1.11.1-GCCcore-12.2.0.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `OpenEXR/3.1.5-GCCcore-12.2.0.lua` `PCRE2/10.40-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `pybind11/2.10.3-GCCcore-12.2.0.lua` `Python/3.10.8-GCCcore-12.2.0.lua` `Qhull/2020.2-GCCcore-12.2.0.lua` `Rust/1.65.0-GCCcore-12.2.0.lua` `SciPy-bundle/2023.02-gfbf-2022b.lua` `Szip/2.1.1-GCCcore-12.2.0.lua` `Xerces-C++/3.2.4-GCCcore-12.2.0.lua` `zstd/1.5.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Armadillo/11.4.3-foss-2022b` `arpack-ng/3.8.0-foss-2022b` `Bison/3.8.2-GCCcore-12.2.0` `Boost/1.81.0-GCC-12.2.0` `Brotli/1.0.9-GCCcore-12.2.0` `Catch2/2.13.9-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `Doxygen/1.9.5-GCCcore-12.2.0` `Eigen/3.4.0-GCCcore-12.2.0` `GEOS/3.11.1-GCC-12.2.0` `gfbf/2022b` `giflib/5.2.1-GCCcore-12.2.0` `git/2.38.1-GCCcore-12.2.0-nodocs` `GMP/6.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `gzip/1.12-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `HDF5/1.14.0-gompi-2022b` `hypothesis/6.68.2-GCCcore-12.2.0` `ICU/72.1-GCCcore-12.2.0` `Imath/3.1.6-GCCcore-12.2.0` `JasPer/4.0.0-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `json-c/0.16-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `libiconv/1.17-GCCcore-12.2.0` `libjpeg-turbo/2.1.4-GCCcore-12.2.0` `libpng/1.6.38-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `lz4/1.9.4-GCCcore-12.2.0` `Meson/0.64.0-GCCcore-12.2.0` `NASM/2.15.05-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `Ninja/1.11.1-GCCcore-12.2.0` `nlohmann_json/3.11.2-GCCcore-12.2.0` `OpenEXR/3.1.5-GCCcore-12.2.0` `PCRE2/10.40-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `pybind11/2.10.3-GCCcore-12.2.0` `Python/3.10.8-GCCcore-12.2.0` `Qhull/2020.2-GCCcore-12.2.0` `Rust/1.65.0-GCCcore-12.2.0` `SciPy-bundle/2023.02-gfbf-2022b` `Szip/2.1.1-GCCcore-12.2.0` `Xerces-C++/3.2.4-GCCcore-12.2.0` `zstd/1.5.2-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 09 00:06:07 UTC 2023	test result	(no tests yet)

eessi-bot · 2023-12-08T21:34:13Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_419/2006

date	job status	comment
Dec 08 21:34:12 UTC 2023	submitted	job id `2006` awaits release by job manager
Dec 08 21:35:11 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 08 21:40:15 UTC 2023	running	job `2006` is running
Dec 08 23:34:37 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2006.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1702078248.tar.gz` size: 447 MiB (468776899 bytes) entries: 66496 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `arpack-ng/3.8.0-foss-2022b.lua` `Bison/3.8.2-GCCcore-12.2.0.lua` `Catch2/2.13.9-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `Doxygen/1.9.5-GCCcore-12.2.0.lua` `Eigen/3.4.0-GCCcore-12.2.0.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `gfbf/2022b.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `git/2.38.1-GCCcore-12.2.0-nodocs.lua` `GMP/6.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `gzip/1.12-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `HDF5/1.14.0-gompi-2022b.lua` `hypothesis/6.68.2-GCCcore-12.2.0.lua` `ICU/72.1-GCCcore-12.2.0.lua` `JasPer/4.0.0-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `libiconv/1.17-GCCcore-12.2.0.lua` `libjpeg-turbo/2.1.4-GCCcore-12.2.0.lua` `libpng/1.6.38-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `lz4/1.9.4-GCCcore-12.2.0.lua` `Meson/0.64.0-GCCcore-12.2.0.lua` `NASM/2.15.05-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `Ninja/1.11.1-GCCcore-12.2.0.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `pybind11/2.10.3-GCCcore-12.2.0.lua` `Python/3.10.8-GCCcore-12.2.0.lua` `Rust/1.65.0-GCCcore-12.2.0.lua` `Szip/2.1.1-GCCcore-12.2.0.lua` `zstd/1.5.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `arpack-ng/3.8.0-foss-2022b` `Bison/3.8.2-GCCcore-12.2.0` `Catch2/2.13.9-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `Doxygen/1.9.5-GCCcore-12.2.0` `Eigen/3.4.0-GCCcore-12.2.0` `GEOS/3.11.1-GCC-12.2.0` `gfbf/2022b` `giflib/5.2.1-GCCcore-12.2.0` `git/2.38.1-GCCcore-12.2.0-nodocs` `GMP/6.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `gzip/1.12-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `HDF5/1.14.0-gompi-2022b` `hypothesis/6.68.2-GCCcore-12.2.0` `ICU/72.1-GCCcore-12.2.0` `JasPer/4.0.0-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `libiconv/1.17-GCCcore-12.2.0` `libjpeg-turbo/2.1.4-GCCcore-12.2.0` `libpng/1.6.38-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `lz4/1.9.4-GCCcore-12.2.0` `Meson/0.64.0-GCCcore-12.2.0` `NASM/2.15.05-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `Ninja/1.11.1-GCCcore-12.2.0` `nlohmann_json/3.11.2-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `pybind11/2.10.3-GCCcore-12.2.0` `Python/3.10.8-GCCcore-12.2.0` `Rust/1.65.0-GCCcore-12.2.0` `Szip/2.1.1-GCCcore-12.2.0` `zstd/1.5.2-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 08 23:34:37 UTC 2023	test result	(no tests yet)

bedroge · 2023-12-09T10:24:18Z

The builds got quite far (even netCDF worked), but failed on the sanity check of LERC. It depends on LD_LIBRARY_PATH being set, and we filter it. I'm fixing this in a PR to the easyconfigs repo.

bedroge · 2023-12-09T21:38:27Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2023-12-09T21:38:30Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 2055, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)

eessi-bot · 2023-12-09T21:38:34Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_419/2055

date	job status	comment
Dec 09 21:38:33 UTC 2023	submitted	job id `2055` awaits release by job manager
Dec 09 21:38:49 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 09 21:43:52 UTC 2023	running	job `2055` is running
Dec 09 23:31:35 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-2055.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1702164440.tar.gz` size: 447 MiB (469041511 bytes) entries: 66524 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `arpack-ng/3.8.0-foss-2022b.lua` `Bison/3.8.2-GCCcore-12.2.0.lua` `Catch2/2.13.9-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `Doxygen/1.9.5-GCCcore-12.2.0.lua` `Eigen/3.4.0-GCCcore-12.2.0.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `gfbf/2022b.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `git/2.38.1-GCCcore-12.2.0-nodocs.lua` `GMP/6.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `gzip/1.12-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `HDF5/1.14.0-gompi-2022b.lua` `hypothesis/6.68.2-GCCcore-12.2.0.lua` `ICU/72.1-GCCcore-12.2.0.lua` `JasPer/4.0.0-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `LERC/4.0.0-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `libiconv/1.17-GCCcore-12.2.0.lua` `libjpeg-turbo/2.1.4-GCCcore-12.2.0.lua` `libpng/1.6.38-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `lz4/1.9.4-GCCcore-12.2.0.lua` `Meson/0.64.0-GCCcore-12.2.0.lua` `NASM/2.15.05-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `Ninja/1.11.1-GCCcore-12.2.0.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `pybind11/2.10.3-GCCcore-12.2.0.lua` `Python/3.10.8-GCCcore-12.2.0.lua` `Rust/1.65.0-GCCcore-12.2.0.lua` `Szip/2.1.1-GCCcore-12.2.0.lua` `zstd/1.5.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `arpack-ng/3.8.0-foss-2022b` `Bison/3.8.2-GCCcore-12.2.0` `Catch2/2.13.9-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `Doxygen/1.9.5-GCCcore-12.2.0` `Eigen/3.4.0-GCCcore-12.2.0` `GEOS/3.11.1-GCC-12.2.0` `gfbf/2022b` `giflib/5.2.1-GCCcore-12.2.0` `git/2.38.1-GCCcore-12.2.0-nodocs` `GMP/6.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `gzip/1.12-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `HDF5/1.14.0-gompi-2022b` `hypothesis/6.68.2-GCCcore-12.2.0` `ICU/72.1-GCCcore-12.2.0` `JasPer/4.0.0-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `LERC/4.0.0-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `libiconv/1.17-GCCcore-12.2.0` `libjpeg-turbo/2.1.4-GCCcore-12.2.0` `libpng/1.6.38-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `lz4/1.9.4-GCCcore-12.2.0` `Meson/0.64.0-GCCcore-12.2.0` `NASM/2.15.05-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `Ninja/1.11.1-GCCcore-12.2.0` `nlohmann_json/3.11.2-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `pybind11/2.10.3-GCCcore-12.2.0` `Python/3.10.8-GCCcore-12.2.0` `Rust/1.65.0-GCCcore-12.2.0` `Szip/2.1.1-GCCcore-12.2.0` `zstd/1.5.2-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 09 23:31:35 UTC 2023	test result	(no tests yet)

bedroge · 2023-12-10T09:42:18Z

LERC was successfully built this time, but now there are quite a lot of test errors in SciPy-bundle:

= 928 failed, 49044 passed, 2480 skipped, 231 xfailed, 11 xpassed, 36 errors in 157.83s (0:02:37) =

bedroge · 2023-12-12T10:18:59Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1

eessi-bot · 2023-12-12T10:19:03Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 2200, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)

eessi-bot · 2023-12-12T10:19:08Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_419/2200

date	job status	comment
Dec 12 10:19:07 UTC 2023	submitted	job id `2200` awaits release by job manager
Dec 12 10:19:14 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 12 10:24:18 UTC 2023	running	job `2200` is running
Dec 12 13:29:36 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2200.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1702387541.tar.gz` size: 676 MiB (708904120 bytes) entries: 99013 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `Armadillo/11.4.3-foss-2022b.lua` `arpack-ng/3.8.0-foss-2022b.lua` `Bison/3.8.2-GCCcore-12.2.0.lua` `Boost/1.81.0-GCC-12.2.0.lua` `Brotli/1.0.9-GCCcore-12.2.0.lua` `Brunsli/0.1-GCCcore-12.2.0.lua` `Catch2/2.13.9-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `Doxygen/1.9.5-GCCcore-12.2.0.lua` `Eigen/3.4.0-GCCcore-12.2.0.lua` `GDAL/3.6.2-foss-2022b.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `gfbf/2022b.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `git/2.38.1-GCCcore-12.2.0-nodocs.lua` `GMP/6.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `gzip/1.12-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `HDF5/1.14.0-gompi-2022b.lua` `Highway/1.0.3-GCCcore-12.2.0.lua` `hypothesis/6.68.2-GCCcore-12.2.0.lua` `ICU/72.1-GCCcore-12.2.0.lua` `Imath/3.1.6-GCCcore-12.2.0.lua` `JasPer/4.0.0-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `json-c/0.16-GCCcore-12.2.0.lua` `LERC/4.0.0-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `libiconv/1.17-GCCcore-12.2.0.lua` `libjpeg-turbo/2.1.4-GCCcore-12.2.0.lua` `libpng/1.6.38-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `lz4/1.9.4-GCCcore-12.2.0.lua` `Meson/0.64.0-GCCcore-12.2.0.lua` `NASM/2.15.05-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `Ninja/1.11.1-GCCcore-12.2.0.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `OpenEXR/3.1.5-GCCcore-12.2.0.lua` `OpenJPEG/2.5.0-GCCcore-12.2.0.lua` `PCRE2/10.40-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `pybind11/2.10.3-GCCcore-12.2.0.lua` `Python/3.10.8-GCCcore-12.2.0.lua` `Qhull/2020.2-GCCcore-12.2.0.lua` `Rust/1.65.0-GCCcore-12.2.0.lua` `SciPy-bundle/2023.02-gfbf-2022b.lua` `Szip/2.1.1-GCCcore-12.2.0.lua` `Xerces-C++/3.2.4-GCCcore-12.2.0.lua` `zstd/1.5.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `Armadillo/11.4.3-foss-2022b` `arpack-ng/3.8.0-foss-2022b` `Bison/3.8.2-GCCcore-12.2.0` `Boost/1.81.0-GCC-12.2.0` `Brotli/1.0.9-GCCcore-12.2.0` `Brunsli/0.1-GCCcore-12.2.0` `Catch2/2.13.9-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `Doxygen/1.9.5-GCCcore-12.2.0` `Eigen/3.4.0-GCCcore-12.2.0` `GDAL/3.6.2-foss-2022b` `GEOS/3.11.1-GCC-12.2.0` `gfbf/2022b` `giflib/5.2.1-GCCcore-12.2.0` `git/2.38.1-GCCcore-12.2.0-nodocs` `GMP/6.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `gzip/1.12-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `HDF5/1.14.0-gompi-2022b` `Highway/1.0.3-GCCcore-12.2.0` `hypothesis/6.68.2-GCCcore-12.2.0` `ICU/72.1-GCCcore-12.2.0` `Imath/3.1.6-GCCcore-12.2.0` `JasPer/4.0.0-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `json-c/0.16-GCCcore-12.2.0` `LERC/4.0.0-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `libiconv/1.17-GCCcore-12.2.0` `libjpeg-turbo/2.1.4-GCCcore-12.2.0` `libpng/1.6.38-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `lz4/1.9.4-GCCcore-12.2.0` `Meson/0.64.0-GCCcore-12.2.0` `NASM/2.15.05-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `Ninja/1.11.1-GCCcore-12.2.0` `nlohmann_json/3.11.2-GCCcore-12.2.0` `OpenEXR/3.1.5-GCCcore-12.2.0` `OpenJPEG/2.5.0-GCCcore-12.2.0` `PCRE2/10.40-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `pybind11/2.10.3-GCCcore-12.2.0` `Python/3.10.8-GCCcore-12.2.0` `Qhull/2020.2-GCCcore-12.2.0` `Rust/1.65.0-GCCcore-12.2.0` `SciPy-bundle/2023.02-gfbf-2022b` `Szip/2.1.1-GCCcore-12.2.0` `Xerces-C++/3.2.4-GCCcore-12.2.0` `zstd/1.5.2-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 12 13:29:36 UTC 2023	test result	(no tests yet)

bedroge · 2023-12-12T10:22:48Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic

eessi-bot · 2023-12-12T10:22:51Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 2201, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)

eessi-bot · 2023-12-12T10:22:55Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_419/2201

date	job status	comment
Dec 12 10:22:54 UTC 2023	submitted	job id `2201` awaits release by job manager
Dec 12 10:23:16 UTC 2023	released	job awaits launch by Slurm scheduler
Dec 12 10:28:24 UTC 2023	running	job `2201` is running
Dec 12 13:31:43 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-2201.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1702387695.tar.gz` size: 676 MiB (708937473 bytes) entries: 99013 modules under 2023.06/software/linux/aarch64/generic/modules/all `Armadillo/11.4.3-foss-2022b.lua` `arpack-ng/3.8.0-foss-2022b.lua` `Bison/3.8.2-GCCcore-12.2.0.lua` `Boost/1.81.0-GCC-12.2.0.lua` `Brotli/1.0.9-GCCcore-12.2.0.lua` `Brunsli/0.1-GCCcore-12.2.0.lua` `Catch2/2.13.9-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `Doxygen/1.9.5-GCCcore-12.2.0.lua` `Eigen/3.4.0-GCCcore-12.2.0.lua` `GDAL/3.6.2-foss-2022b.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `gfbf/2022b.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `git/2.38.1-GCCcore-12.2.0-nodocs.lua` `GMP/6.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `gzip/1.12-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `HDF5/1.14.0-gompi-2022b.lua` `Highway/1.0.3-GCCcore-12.2.0.lua` `hypothesis/6.68.2-GCCcore-12.2.0.lua` `ICU/72.1-GCCcore-12.2.0.lua` `Imath/3.1.6-GCCcore-12.2.0.lua` `JasPer/4.0.0-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `json-c/0.16-GCCcore-12.2.0.lua` `LERC/4.0.0-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `libiconv/1.17-GCCcore-12.2.0.lua` `libjpeg-turbo/2.1.4-GCCcore-12.2.0.lua` `libpng/1.6.38-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `lz4/1.9.4-GCCcore-12.2.0.lua` `Meson/0.64.0-GCCcore-12.2.0.lua` `NASM/2.15.05-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `Ninja/1.11.1-GCCcore-12.2.0.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `OpenEXR/3.1.5-GCCcore-12.2.0.lua` `OpenJPEG/2.5.0-GCCcore-12.2.0.lua` `PCRE2/10.40-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `pybind11/2.10.3-GCCcore-12.2.0.lua` `Python/3.10.8-GCCcore-12.2.0.lua` `Qhull/2020.2-GCCcore-12.2.0.lua` `Rust/1.65.0-GCCcore-12.2.0.lua` `SciPy-bundle/2023.02-gfbf-2022b.lua` `Szip/2.1.1-GCCcore-12.2.0.lua` `Xerces-C++/3.2.4-GCCcore-12.2.0.lua` `zstd/1.5.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `Armadillo/11.4.3-foss-2022b` `arpack-ng/3.8.0-foss-2022b` `Bison/3.8.2-GCCcore-12.2.0` `Boost/1.81.0-GCC-12.2.0` `Brotli/1.0.9-GCCcore-12.2.0` `Brunsli/0.1-GCCcore-12.2.0` `Catch2/2.13.9-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `Doxygen/1.9.5-GCCcore-12.2.0` `Eigen/3.4.0-GCCcore-12.2.0` `GDAL/3.6.2-foss-2022b` `GEOS/3.11.1-GCC-12.2.0` `gfbf/2022b` `giflib/5.2.1-GCCcore-12.2.0` `git/2.38.1-GCCcore-12.2.0-nodocs` `GMP/6.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `gzip/1.12-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `HDF5/1.14.0-gompi-2022b` `Highway/1.0.3-GCCcore-12.2.0` `hypothesis/6.68.2-GCCcore-12.2.0` `ICU/72.1-GCCcore-12.2.0` `Imath/3.1.6-GCCcore-12.2.0` `JasPer/4.0.0-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `json-c/0.16-GCCcore-12.2.0` `LERC/4.0.0-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `libiconv/1.17-GCCcore-12.2.0` `libjpeg-turbo/2.1.4-GCCcore-12.2.0` `libpng/1.6.38-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `lz4/1.9.4-GCCcore-12.2.0` `Meson/0.64.0-GCCcore-12.2.0` `NASM/2.15.05-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `Ninja/1.11.1-GCCcore-12.2.0` `nlohmann_json/3.11.2-GCCcore-12.2.0` `OpenEXR/3.1.5-GCCcore-12.2.0` `OpenJPEG/2.5.0-GCCcore-12.2.0` `PCRE2/10.40-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `pybind11/2.10.3-GCCcore-12.2.0` `Python/3.10.8-GCCcore-12.2.0` `Qhull/2020.2-GCCcore-12.2.0` `Rust/1.65.0-GCCcore-12.2.0` `SciPy-bundle/2023.02-gfbf-2022b` `Szip/2.1.1-GCCcore-12.2.0` `Xerces-C++/3.2.4-GCCcore-12.2.0` `zstd/1.5.2-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Dec 12 13:31:43 UTC 2023	test result	(no tests yet)

bedroge · 2023-12-18T13:35:04Z

Tried to build SciPy-bundle in an interactive session, and with the default easyconfig I indeed got almost 1000 errors. Then I tweaked the easyconfig and changed the scipy version from 1.10.1 to 1.11.0 and 1.11.1 (for which I also had to bump some dependencies, e.g. Cython, Meson, pybind11), and then I only got 6 errors:

FAILED scipy/integrate/_ivp/tests/test_ivp.py::test_empty - AssertionError: G...
FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris
FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris_float32
FAILED scipy/stats/tests/test_distributions.py::TestInvGamma::test_invgamma_inf_gh_1866
FAILED scipy/stats/tests/test_distributions.py::TestErlang::test_erlang_runtimewarning
FAILED scipy/stats/tests/test_morestats.py::TestMvsdist::test_warns - Runtime...
= 6 failed, 54403 passed, 3016 skipped, 224 xfailed, 12 xpassed, 2183 warnings in 983.61s (0:16:23) =

By bumping numpy from 1.24.2 (default) to 1.25.1 (same as in 2023a) I only get two errors, which corresponds to what we saw in #403.

FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris
FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris_float32
= 2 failed, 54409 passed, 3016 skipped, 224 xfailed, 12 xpassed, 10917 warnings in 924.79s (0:15:24) =

And with numpy 1.25.1 and scipy 1.10.1:

= 44 failed, 49964 passed, 2480 skipped, 231 xfailed, 11 xpassed in 138.26s (0:02:18) =

numpy 1.24.4 and scipy 1.10.1:

= 928 failed, 49044 passed, 2480 skipped, 231 xfailed, 11 xpassed, 36 errors in 206.66s (0:03:26) =

bedroge · 2024-01-05T15:33:27Z

Some more tests/observations with different --optarch values for SciPy-bundle-2023.02-gfbf-2022b.eb:

--optarch=march=armv8.4-a
installation succeeds

--optarch=march=armv8.4-a+sve (or --optarch=mcpu=neoverse-v1)
= 928 failed, 49044 passed, 2480 skipped, 231 xfailed, 11 xpassed, 36 errors in 199.12s (0:03:19) =

--optarch=mtune=neoverse-512tvb
= 44 failed, 49964 passed, 2480 skipped, 231 xfailed, 11 xpassed in 157.85s (0:02:37) =

--optarch=mcpu=neoverse-512tvb
= 46 failed, 49962 passed, 2480 skipped, 231 xfailed, 11 xpassed in 156.17s (0:02:36) =

boegel · 2024-01-07T13:36:15Z

Any idea why we're seeing way more errors with SciPy-bundle/2023.02-gfbf-2022b compared to SciPy-bundle/2022.05-foss-2022a which we have installed in EESSI pilot 2023.06?

bedroge · 2024-01-08T08:18:11Z

Any idea why we're seeing way more errors with SciPy-bundle/2023.02-gfbf-2022b compared to SciPy-bundle/2022.05-foss-2022a which we have installed in EESSI pilot 2023.06?

I don't know, but it definitely feels like there's some issue with the SVE-related code/tests in numpy 1.24.x (either in general, or for this particular CPU, not sure): whenever I enable SVE in some way (e.g. by adding +sve to march), I get a lot of errors.

When comparing 1.24.4 to 1.25.1 in GitHub I did find issue numpy/numpy#24054 and suspected that it may be the culprit, but when checking the actual 1.24.4 code I can't find this piece of code anymore. So I'm not sure why it popped up in the diff, but it looks like it may not apply to this version (or maybe in some different way).

boegel · 2024-01-10T16:44:10Z

easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.8.2-2022b.yml

+      # see https://github.com/easybuilders/easybuild-easyconfigs/pull/19386
+      options:
+        from-pr: 19386
+  - GDAL-3.6.2-foss-2022b.eb


We should move this to eessi-2023.06-eb-4.9.0-2022b.yml, once #448 is merged

boegel · 2024-01-10T17:42:33Z

@bedroge Let's follow up on SciPy-bundle with foss/2022b in #448

…-layer into GDAL/3.6.2-foss-2022b

bedroge · 2024-02-09T15:15:23Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2024-02-09T15:15:26Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

…-layer into GDAL/3.6.2-foss-2022b

bedroge · 2024-02-09T16:04:05Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic

eessi-bot · 2024-02-09T16:04:08Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 5674, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)

eessi-bot · 2024-02-09T16:04:12Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.02/pr_419/5674

date	job status	comment
Feb 09 16:04:11 UTC 2024	submitted	job id `5674` awaits release by job manager
Feb 09 16:05:02 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 09 16:10:07 UTC 2024	running	job `5674` is running
Feb 09 17:03:20 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5674.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1707498158.tar.gz` size: 107 MiB (112947342 bytes) entries: 22967 modules under 2023.06/software/linux/aarch64/generic/modules/all `Armadillo/11.4.3-foss-2022b.lua` `arpack-ng/3.8.0-foss-2022b.lua` `Boost/1.81.0-GCC-12.2.0.lua` `Brunsli/0.1-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `GDAL/3.6.2-foss-2022b.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `Highway/1.0.3-GCCcore-12.2.0.lua` `Imath/3.1.6-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `json-c/0.16-GCCcore-12.2.0.lua` `LERC/4.0.0-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `OpenEXR/3.1.5-GCCcore-12.2.0.lua` `OpenJPEG/2.5.0-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `Qhull/2020.2-GCCcore-12.2.0.lua` `Xerces-C++/3.2.4-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `Armadillo/11.4.3-foss-2022b` `arpack-ng/3.8.0-foss-2022b` `Boost/1.81.0-GCC-12.2.0` `Brunsli/0.1-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `GDAL/3.6.2-foss-2022b` `GEOS/3.11.1-GCC-12.2.0` `giflib/5.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `Highway/1.0.3-GCCcore-12.2.0` `Imath/3.1.6-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `json-c/0.16-GCCcore-12.2.0` `LERC/4.0.0-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `nlohmann_json/3.11.2-GCCcore-12.2.0` `OpenEXR/3.1.5-GCCcore-12.2.0` `OpenJPEG/2.5.0-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `Qhull/2020.2-GCCcore-12.2.0` `Xerces-C++/3.2.4-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 09 17:03:20 UTC 2024	test result	(no tests yet)
Feb 10 11:23:02 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1707498158.tar.gz` to S3 bucket succeeded

bedroge · 2024-02-09T16:05:48Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2024-02-09T16:05:52Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 5675, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)

eessi-bot · 2024-02-09T16:05:55Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.02/pr_419/5675

date	job status	comment
Feb 09 16:05:54 UTC 2024	submitted	job id `5675` awaits release by job manager
Feb 09 16:06:04 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 09 16:10:09 UTC 2024	running	job `5675` is running
Feb 09 16:52:03 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5675.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1707497438.tar.gz` size: 107 MiB (112961662 bytes) entries: 22967 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `Armadillo/11.4.3-foss-2022b.lua` `arpack-ng/3.8.0-foss-2022b.lua` `Boost/1.81.0-GCC-12.2.0.lua` `Brunsli/0.1-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `GDAL/3.6.2-foss-2022b.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `Highway/1.0.3-GCCcore-12.2.0.lua` `Imath/3.1.6-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `json-c/0.16-GCCcore-12.2.0.lua` `LERC/4.0.0-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `OpenEXR/3.1.5-GCCcore-12.2.0.lua` `OpenJPEG/2.5.0-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `Qhull/2020.2-GCCcore-12.2.0.lua` `Xerces-C++/3.2.4-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `Armadillo/11.4.3-foss-2022b` `arpack-ng/3.8.0-foss-2022b` `Boost/1.81.0-GCC-12.2.0` `Brunsli/0.1-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `GDAL/3.6.2-foss-2022b` `GEOS/3.11.1-GCC-12.2.0` `giflib/5.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `Highway/1.0.3-GCCcore-12.2.0` `Imath/3.1.6-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `json-c/0.16-GCCcore-12.2.0` `LERC/4.0.0-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `nlohmann_json/3.11.2-GCCcore-12.2.0` `OpenEXR/3.1.5-GCCcore-12.2.0` `OpenJPEG/2.5.0-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `Qhull/2020.2-GCCcore-12.2.0` `Xerces-C++/3.2.4-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 09 16:52:03 UTC 2024	test result	(no tests yet)
Feb 10 11:25:08 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1707497438.tar.gz` to S3 bucket succeeded

bedroge · 2024-02-09T17:43:33Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot · 2024-02-09T17:43:36Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 5676, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 5677, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 5678, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 5679, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 5680, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 5681, for details & status see {2023.06}[foss/2022b] GDAL 3.6.2 #419 (comment)

eessi-bot · 2024-02-09T17:43:39Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.02/pr_419/5676

date	job status	comment
Feb 09 17:43:39 UTC 2024	submitted	job id `5676` awaits release by job manager
Feb 09 17:44:29 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 09 17:49:44 UTC 2024	running	job `5676` is running
Feb 09 18:44:32 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5676.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1707504175.tar.gz` size: 107 MiB (112931131 bytes) entries: 22967 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `Armadillo/11.4.3-foss-2022b.lua` `arpack-ng/3.8.0-foss-2022b.lua` `Boost/1.81.0-GCC-12.2.0.lua` `Brunsli/0.1-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `GDAL/3.6.2-foss-2022b.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `Highway/1.0.3-GCCcore-12.2.0.lua` `Imath/3.1.6-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `json-c/0.16-GCCcore-12.2.0.lua` `LERC/4.0.0-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `OpenEXR/3.1.5-GCCcore-12.2.0.lua` `OpenJPEG/2.5.0-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `Qhull/2020.2-GCCcore-12.2.0.lua` `Xerces-C++/3.2.4-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `Armadillo/11.4.3-foss-2022b` `arpack-ng/3.8.0-foss-2022b` `Boost/1.81.0-GCC-12.2.0` `Brunsli/0.1-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `GDAL/3.6.2-foss-2022b` `GEOS/3.11.1-GCC-12.2.0` `giflib/5.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `Highway/1.0.3-GCCcore-12.2.0` `Imath/3.1.6-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `json-c/0.16-GCCcore-12.2.0` `LERC/4.0.0-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `nlohmann_json/3.11.2-GCCcore-12.2.0` `OpenEXR/3.1.5-GCCcore-12.2.0` `OpenJPEG/2.5.0-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `Qhull/2020.2-GCCcore-12.2.0` `Xerces-C++/3.2.4-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 09 18:44:32 UTC 2024	test result	(no tests yet)
Feb 10 11:22:41 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1707504175.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-02-09T17:43:43Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.02/pr_419/5677

date	job status	comment
Feb 09 17:43:42 UTC 2024	submitted	job id `5677` awaits release by job manager
Feb 09 17:44:37 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 09 17:50:57 UTC 2024	running	job `5677` is running
Feb 09 18:56:23 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5677.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1707504909.tar.gz` size: 110 MiB (115932874 bytes) entries: 22967 modules under 2023.06/software/linux/x86_64/generic/modules/all `Armadillo/11.4.3-foss-2022b.lua` `arpack-ng/3.8.0-foss-2022b.lua` `Boost/1.81.0-GCC-12.2.0.lua` `Brunsli/0.1-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `GDAL/3.6.2-foss-2022b.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `Highway/1.0.3-GCCcore-12.2.0.lua` `Imath/3.1.6-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `json-c/0.16-GCCcore-12.2.0.lua` `LERC/4.0.0-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `OpenEXR/3.1.5-GCCcore-12.2.0.lua` `OpenJPEG/2.5.0-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `Qhull/2020.2-GCCcore-12.2.0.lua` `Xerces-C++/3.2.4-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `Armadillo/11.4.3-foss-2022b` `arpack-ng/3.8.0-foss-2022b` `Boost/1.81.0-GCC-12.2.0` `Brunsli/0.1-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `GDAL/3.6.2-foss-2022b` `GEOS/3.11.1-GCC-12.2.0` `giflib/5.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `Highway/1.0.3-GCCcore-12.2.0` `Imath/3.1.6-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `json-c/0.16-GCCcore-12.2.0` `LERC/4.0.0-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `nlohmann_json/3.11.2-GCCcore-12.2.0` `OpenEXR/3.1.5-GCCcore-12.2.0` `OpenJPEG/2.5.0-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `Qhull/2020.2-GCCcore-12.2.0` `Xerces-C++/3.2.4-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 09 18:56:23 UTC 2024	test result	(no tests yet)
Feb 10 11:23:44 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1707504909.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-02-09T17:43:46Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.02/pr_419/5678

date	job status	comment
Feb 09 17:43:46 UTC 2024	submitted	job id `5678` awaits release by job manager
Feb 09 17:44:31 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 09 17:49:47 UTC 2024	running	job `5678` is running
Feb 09 18:52:11 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5678.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1707504678.tar.gz` size: 111 MiB (116700237 bytes) entries: 22967 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `Armadillo/11.4.3-foss-2022b.lua` `arpack-ng/3.8.0-foss-2022b.lua` `Boost/1.81.0-GCC-12.2.0.lua` `Brunsli/0.1-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `GDAL/3.6.2-foss-2022b.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `Highway/1.0.3-GCCcore-12.2.0.lua` `Imath/3.1.6-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `json-c/0.16-GCCcore-12.2.0.lua` `LERC/4.0.0-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `OpenEXR/3.1.5-GCCcore-12.2.0.lua` `OpenJPEG/2.5.0-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `Qhull/2020.2-GCCcore-12.2.0.lua` `Xerces-C++/3.2.4-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `Armadillo/11.4.3-foss-2022b` `arpack-ng/3.8.0-foss-2022b` `Boost/1.81.0-GCC-12.2.0` `Brunsli/0.1-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `GDAL/3.6.2-foss-2022b` `GEOS/3.11.1-GCC-12.2.0` `giflib/5.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `Highway/1.0.3-GCCcore-12.2.0` `Imath/3.1.6-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `json-c/0.16-GCCcore-12.2.0` `LERC/4.0.0-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `nlohmann_json/3.11.2-GCCcore-12.2.0` `OpenEXR/3.1.5-GCCcore-12.2.0` `OpenJPEG/2.5.0-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `Qhull/2020.2-GCCcore-12.2.0` `Xerces-C++/3.2.4-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 09 18:52:11 UTC 2024	test result	(no tests yet)
Feb 10 11:24:05 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1707504678.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-02-09T17:43:50Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.02/pr_419/5679

date	job status	comment
Feb 09 17:43:49 UTC 2024	submitted	job id `5679` awaits release by job manager
Feb 09 17:44:34 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 09 17:49:50 UTC 2024	running	job `5679` is running
Feb 09 18:40:02 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5679.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1707503910.tar.gz` size: 111 MiB (116708062 bytes) entries: 22967 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Armadillo/11.4.3-foss-2022b.lua` `arpack-ng/3.8.0-foss-2022b.lua` `Boost/1.81.0-GCC-12.2.0.lua` `Brunsli/0.1-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `GDAL/3.6.2-foss-2022b.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `Highway/1.0.3-GCCcore-12.2.0.lua` `Imath/3.1.6-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `json-c/0.16-GCCcore-12.2.0.lua` `LERC/4.0.0-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `OpenEXR/3.1.5-GCCcore-12.2.0.lua` `OpenJPEG/2.5.0-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `Qhull/2020.2-GCCcore-12.2.0.lua` `Xerces-C++/3.2.4-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Armadillo/11.4.3-foss-2022b` `arpack-ng/3.8.0-foss-2022b` `Boost/1.81.0-GCC-12.2.0` `Brunsli/0.1-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `GDAL/3.6.2-foss-2022b` `GEOS/3.11.1-GCC-12.2.0` `giflib/5.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `Highway/1.0.3-GCCcore-12.2.0` `Imath/3.1.6-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `json-c/0.16-GCCcore-12.2.0` `LERC/4.0.0-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `nlohmann_json/3.11.2-GCCcore-12.2.0` `OpenEXR/3.1.5-GCCcore-12.2.0` `OpenJPEG/2.5.0-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `Qhull/2020.2-GCCcore-12.2.0` `Xerces-C++/3.2.4-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 09 18:40:02 UTC 2024	test result	(no tests yet)
Feb 10 11:23:23 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1707503910.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-02-09T17:43:54Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.02/pr_419/5680

date	job status	comment
Feb 09 17:43:53 UTC 2024	submitted	job id `5680` awaits release by job manager
Feb 09 17:44:39 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 09 17:52:06 UTC 2024	running	job `5680` is running
Feb 09 18:58:26 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5680.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1707505024.tar.gz` size: 111 MiB (116750041 bytes) entries: 22967 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `Armadillo/11.4.3-foss-2022b.lua` `arpack-ng/3.8.0-foss-2022b.lua` `Boost/1.81.0-GCC-12.2.0.lua` `Brunsli/0.1-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `GDAL/3.6.2-foss-2022b.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `Highway/1.0.3-GCCcore-12.2.0.lua` `Imath/3.1.6-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `json-c/0.16-GCCcore-12.2.0.lua` `LERC/4.0.0-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `OpenEXR/3.1.5-GCCcore-12.2.0.lua` `OpenJPEG/2.5.0-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `Qhull/2020.2-GCCcore-12.2.0.lua` `Xerces-C++/3.2.4-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `Armadillo/11.4.3-foss-2022b` `arpack-ng/3.8.0-foss-2022b` `Boost/1.81.0-GCC-12.2.0` `Brunsli/0.1-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `GDAL/3.6.2-foss-2022b` `GEOS/3.11.1-GCC-12.2.0` `giflib/5.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `Highway/1.0.3-GCCcore-12.2.0` `Imath/3.1.6-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `json-c/0.16-GCCcore-12.2.0` `LERC/4.0.0-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `nlohmann_json/3.11.2-GCCcore-12.2.0` `OpenEXR/3.1.5-GCCcore-12.2.0` `OpenJPEG/2.5.0-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `Qhull/2020.2-GCCcore-12.2.0` `Xerces-C++/3.2.4-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 09 18:58:26 UTC 2024	test result	(no tests yet)
Feb 10 11:24:26 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1707505024.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-02-09T17:43:57Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.02/pr_419/5681

date	job status	comment
Feb 09 17:43:57 UTC 2024	submitted	job id `5681` awaits release by job manager
Feb 09 17:44:41 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 09 17:52:08 UTC 2024	running	job `5681` is running
Feb 09 18:50:03 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-5681.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1707504536.tar.gz` size: 111 MiB (116392034 bytes) entries: 22967 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `Armadillo/11.4.3-foss-2022b.lua` `arpack-ng/3.8.0-foss-2022b.lua` `Boost/1.81.0-GCC-12.2.0.lua` `Brunsli/0.1-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `GDAL/3.6.2-foss-2022b.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `Highway/1.0.3-GCCcore-12.2.0.lua` `Imath/3.1.6-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `json-c/0.16-GCCcore-12.2.0.lua` `LERC/4.0.0-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `OpenEXR/3.1.5-GCCcore-12.2.0.lua` `OpenJPEG/2.5.0-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `Qhull/2020.2-GCCcore-12.2.0.lua` `Xerces-C++/3.2.4-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `Armadillo/11.4.3-foss-2022b` `arpack-ng/3.8.0-foss-2022b` `Boost/1.81.0-GCC-12.2.0` `Brunsli/0.1-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `GDAL/3.6.2-foss-2022b` `GEOS/3.11.1-GCC-12.2.0` `giflib/5.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `Highway/1.0.3-GCCcore-12.2.0` `Imath/3.1.6-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `json-c/0.16-GCCcore-12.2.0` `LERC/4.0.0-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `nlohmann_json/3.11.2-GCCcore-12.2.0` `OpenEXR/3.1.5-GCCcore-12.2.0` `OpenJPEG/2.5.0-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `Qhull/2020.2-GCCcore-12.2.0` `Xerces-C++/3.2.4-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 09 18:50:03 UTC 2024	test result	(no tests yet)
Feb 10 11:24:47 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1707504536.tar.gz` to S3 bucket succeeded

boegel

lgtm

boegel · 2024-02-10T15:19:48Z

All staging PRs merged

add pybind and GDAL

91f5459

add LERC with from-pr for sanity check fix

6602ed8

bedroge mentioned this pull request Dec 12, 2023

{2023.06}[foss/2022b] Qt5 v5.15.7 #422

Merged

trz42 added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Dec 15, 2023

boegel requested changes Jan 10, 2024

View reviewed changes

boegel mentioned this pull request Jan 10, 2024

{2023.06}[2022b] SciPy-bundle v2023.02 #448

Merged

bedroge mentioned this pull request Jan 15, 2024

{2023.06}[foss/2022b] R v4.2.2 #452

Merged

bedroge added 2 commits January 15, 2024 22:44

merge main branch

9ae0832

Merge branch '2023.06-software.eessi.io' of github.com:EESSI/software…

89fe338

…-layer into GDAL/3.6.2-foss-2022b

bedroge added 2 commits February 9, 2024 16:23

add extra blank line

0d48dca

Merge branch '2023.06-software.eessi.io' of github.com:EESSI/software…

2e8bde5

…-layer into GDAL/3.6.2-foss-2022b

bedroge mentioned this pull request Feb 9, 2024

Failing test(s) for Highway on neoverse_v1 #469

Closed

bedroge added 2 commits February 9, 2024 16:41

add known issue for Highway

8b38c32

link to internal issue for Highway, and only exclude a single SVE test

669e6e4

bedroge added the ready-to-deploy Mark a PR as ready to deploy label Feb 9, 2024

boegel approved these changes Feb 10, 2024

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boegel added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Feb 10, 2024

boegel merged commit 1fdf39b into 2023.06-software.eessi.io Feb 10, 2024

bedroge deleted the GDAL/3.6.2-foss-2022b branch February 11, 2024 07:58

This was referenced Apr 5, 2024

Syncing code-base and CVMFS repository with EESSI (April 2024) NorESSI/software-layer#294

Open

add pre_test hook for dealing with failing Highway tests NorESSI/software-layer#297

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