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DiltheyLab

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  1. HLA-LA HLA-LA Public

    Fast HLA type inference from whole-genome data

    C++ 143 43

  2. MetaMaps MetaMaps Public

    Long-read metagenomic analysis

    Perl 110 23

  3. MHC-annotation MHC-annotation Public

    Tools to annotate haplotypes of MHC with gene and transcript information

    Python 6

  4. graph-genome-workbench graph-genome-workbench Public

    Software, workflows and information for working with graph genomes

    Python 5

  5. SAM2Alignment SAM2Alignment Public

    C++ 3

  6. RSVTyper RSVTyper Public

    Python 3

Repositories

Showing 10 of 15 repositories
  • RSVTyper Public
    DiltheyLab/RSVTyper’s past year of commit activity
    Python 3 0 0 0 Updated Mar 13, 2026
  • MPore Public
    DiltheyLab/MPore’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 1, 2026
  • GENTRAIN Public
    DiltheyLab/GENTRAIN’s past year of commit activity
    TypeScript 1 MIT 0 0 0 Updated Jan 20, 2026
  • SARS-CoV-2-GenomicsEnhancedContactTracing-Code Public
    DiltheyLab/SARS-CoV-2-GenomicsEnhancedContactTracing-Code’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 5, 2026
  • VaCaHLA Public

    Snakemake pipeline to call somatic mutations in the HLA region

    DiltheyLab/VaCaHLA’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 18, 2025
  • cfCOP Public
    DiltheyLab/cfCOP’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Apr 9, 2025
  • HLA-LA Public

    Fast HLA type inference from whole-genome data

    DiltheyLab/HLA-LA’s past year of commit activity
    C++ 143 GPL-3.0 43 55 (8 issues need help) 2 Updated Apr 3, 2025
  • graph-genome-workbench Public

    Software, workflows and information for working with graph genomes

    DiltheyLab/graph-genome-workbench’s past year of commit activity
    Python 5 MIT 0 0 0 Updated Sep 16, 2024
  • MetaMaps Public

    Long-read metagenomic analysis

    DiltheyLab/MetaMaps’s past year of commit activity
    Perl 110 23 26 (2 issues need help) 1 Updated Oct 10, 2023
  • MHC-annotation Public

    Tools to annotate haplotypes of MHC with gene and transcript information

    DiltheyLab/MHC-annotation’s past year of commit activity
    Python 6 MIT 0 4 0 Updated May 11, 2022
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