Clean dscim

[JMGilbert]

This PR deals with:

• mortality_inputs_archived.py is a function call [will be moved when new format mortality inputs are figured out]
  • deleted
• generate_yaml.py doesn't seem necessary
  • deleted
• plotting_utils.py doesn't seem necessary
  • plotting utils only used in one place
  • copy and pasted into the notebook that called it
• update_damage_function_library() old function can just be removed (not currently in use)
  • deleted
• constant_equivalent_discount_rate() and calculate_constant_equivalent_discount_rate() seem like diagnostic functions
  • used for integration paper tables here
  • moved to a script in dscim-diagnostics in dscim-cil
• get_model_weights() references Battuta file path and also is mostly used for diagnostics outside of dscim itself
  • used in dscim-cil for diagnostics
  • moved to a script in dscim-diagnostics in dscim-cil
• dscim/preprocessing/misc and dscim/preprocessing/climate have lots of hardcoded filepaths. Seems like we want many of these scripts, but they should be integrated into our climate/socioeconomic modules in the future
  • ALL BELOW DELETED/MOVED
  • misc:
    • convert_float32.py is entirely unused anywhere, it seems to have been used originally to convert the ag damages to float32 from float64 (deleted)
    • bottom_code_econ_zarr.py transferred to dscim-cil
    • check_nans.py transferred to dscim-cil
  • climate:
    • all_masks_rff.py deleting because we don’t use masks for rff, happy to move somewhere if we actually want it
    • ssp_clipped_rff.py some kind of diagnostic to mask runids based on max and min SSP values for gdp,pop. Deleting unless we want it for something
    • stack_iterations.py I really don’t know what this was for, but now I think our iterations come stacked, deleting (probably dealt with old climate data with iter dimension)
    • stack_masks.py I really don’t know, deleting (probably used for ease of diagnostics when we used masks, which we no longer use)

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 68.91%. Comparing base (25dfb39) to head (f16b308).
Report is 14 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #249      +/-   ##
==========================================
+ Coverage   65.63%   68.91%   +3.27%     
==========================================
  Files          17       15       -2     
  Lines        1845     1750      -95     
==========================================
- Hits         1211     1206       -5     
+ Misses        634      544      -90     

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