diff --git a/pyproject.toml b/pyproject.toml index 9406899..58b7cf4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -17,7 +17,7 @@ classifiers = [ "Operating System :: OS Independent", ] dependencies = [ - "ga4gh.vrs>=2.2.0,<3.0", + "ga4gh.vrs>=2.3.0,<3.0", "ga4gh.va_spec~=0.4.3", "anyvar>=1.0,<2.0", "fastapi>=0.95.0", diff --git a/requirements.txt b/requirements.txt index 21d4356..8fcae0d 100644 --- a/requirements.txt +++ b/requirements.txt @@ -27,12 +27,13 @@ fastapi==0.128.0 filelock==3.20.3 ga4gh-cat-vrs==0.7.2 ga4gh-va-spec==0.4.3 -ga4gh-vrs==2.2.0 +ga4gh-vrs==2.3.0 h11==0.16.0 -hgvs==1.5.4 +hgvs==1.5.6 humanfriendly==10.0 idna==3.11 importlib-metadata==8.7.1 +importlib-resources==6.5.2 ipython==8.38.0 jedi==0.19.2 jmespath==1.0.1 @@ -62,7 +63,6 @@ pytz==2025.2 pyyaml==6.0.3 requests==2.32.5 s3transfer==0.16.0 -setuptools==80.9.0 six==1.17.0 snowflake-connector-python==4.2.0 snowflake-sqlalchemy==1.8.2 diff --git a/tests/integration/functions/cassettes/test_get_caf/test_get_caf_no_results.yaml b/tests/integration/functions/cassettes/test_get_caf/test_get_caf_no_results.yaml deleted file mode 100644 index 08f9938..0000000 --- a/tests/integration/functions/cassettes/test_get_caf/test_get_caf_no_results.yaml +++ /dev/null @@ -1,538 +0,0 @@ -interactions: -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/metadata/GRCh38:7 - response: - body: - string: "{\n \"added\": \"2016-08-27T21:23:35Z\",\n \"aliases\": [\n \"GRCh38:7\",\n - \ \"GRCh38:chr7\",\n \"GRCh38.p1:7\",\n \"GRCh38.p1:chr7\",\n \"GRCh38.p10:7\",\n - \ \"GRCh38.p10:chr7\",\n \"GRCh38.p11:7\",\n \"GRCh38.p11:chr7\",\n - \ \"GRCh38.p12:7\",\n \"GRCh38.p12:chr7\",\n \"GRCh38.p2:7\",\n \"GRCh38.p2:chr7\",\n - \ \"GRCh38.p3:7\",\n \"GRCh38.p3:chr7\",\n \"GRCh38.p4:7\",\n \"GRCh38.p4:chr7\",\n - \ \"GRCh38.p5:7\",\n \"GRCh38.p5:chr7\",\n \"GRCh38.p6:7\",\n \"GRCh38.p6:chr7\",\n - \ \"GRCh38.p7:7\",\n \"GRCh38.p7:chr7\",\n \"GRCh38.p8:7\",\n \"GRCh38.p8:chr7\",\n - \ \"GRCh38.p9:7\",\n \"GRCh38.p9:chr7\",\n \"MD5:cc044cc2256a1141212660fb07b6171e\",\n - \ \"NCBI:NC_000007.14\",\n \"refseq:NC_000007.14\",\n \"SEGUID:4+JjCcBVhPCr8vdIhUKFycPv8bY\",\n - \ \"SHA1:e3e26309c05584f0abf2f748854285c9c3eff1b6\",\n \"VMC:GS_F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul\",\n - \ \"sha512t24u:F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul\",\n \"ga4gh:SQ.F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul\"\n - \ ],\n \"alphabet\": \"ACGNRSTY\",\n \"length\": 159345973\n}\n" - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/GRCh38:7?start=140753335&end=140753336 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/metadata/ga4gh:SQ.F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul - response: - body: - string: "{\n \"added\": \"2016-08-27T21:23:35Z\",\n \"aliases\": [\n \"GRCh38:7\",\n - \ \"GRCh38:chr7\",\n \"GRCh38.p1:7\",\n \"GRCh38.p1:chr7\",\n \"GRCh38.p10:7\",\n - \ \"GRCh38.p10:chr7\",\n \"GRCh38.p11:7\",\n \"GRCh38.p11:chr7\",\n - \ \"GRCh38.p12:7\",\n \"GRCh38.p12:chr7\",\n \"GRCh38.p2:7\",\n \"GRCh38.p2:chr7\",\n - \ \"GRCh38.p3:7\",\n \"GRCh38.p3:chr7\",\n \"GRCh38.p4:7\",\n \"GRCh38.p4:chr7\",\n - \ \"GRCh38.p5:7\",\n \"GRCh38.p5:chr7\",\n \"GRCh38.p6:7\",\n \"GRCh38.p6:chr7\",\n - \ \"GRCh38.p7:7\",\n \"GRCh38.p7:chr7\",\n \"GRCh38.p8:7\",\n \"GRCh38.p8:chr7\",\n - \ \"GRCh38.p9:7\",\n \"GRCh38.p9:chr7\",\n \"MD5:cc044cc2256a1141212660fb07b6171e\",\n - \ \"NCBI:NC_000007.14\",\n \"refseq:NC_000007.14\",\n \"SEGUID:4+JjCcBVhPCr8vdIhUKFycPv8bY\",\n - \ \"SHA1:e3e26309c05584f0abf2f748854285c9c3eff1b6\",\n \"VMC:GS_F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul\",\n - \ \"sha512t24u:F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul\",\n \"ga4gh:SQ.F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul\"\n - \ ],\n \"alphabet\": \"ACGNRSTY\",\n \"length\": 159345973\n}\n" - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul?start=140753335&end=140753336 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/metadata/GRCh38:Y - response: - body: - string: "{\n \"added\": \"2016-08-27T23:57:42Z\",\n \"aliases\": [\n \"GRCh38:Y\",\n - \ \"GRCh38:chrY\",\n \"GRCh38.p1:Y\",\n \"GRCh38.p1:chrY\",\n \"GRCh38.p10:Y\",\n - \ \"GRCh38.p10:chrY\",\n \"GRCh38.p11:Y\",\n \"GRCh38.p11:chrY\",\n - \ \"GRCh38.p12:Y\",\n \"GRCh38.p12:chrY\",\n \"GRCh38.p2:Y\",\n \"GRCh38.p2:chrY\",\n - \ \"GRCh38.p3:Y\",\n \"GRCh38.p3:chrY\",\n \"GRCh38.p4:Y\",\n \"GRCh38.p4:chrY\",\n - \ \"GRCh38.p5:Y\",\n \"GRCh38.p5:chrY\",\n \"GRCh38.p6:Y\",\n \"GRCh38.p6:chrY\",\n - \ \"GRCh38.p7:Y\",\n \"GRCh38.p7:chrY\",\n \"GRCh38.p8:Y\",\n \"GRCh38.p8:chrY\",\n - \ \"GRCh38.p9:Y\",\n \"GRCh38.p9:chrY\",\n \"MD5:447f54a94ef525e42ce58d3e0c48b3f8\",\n - \ \"NCBI:NC_000024.10\",\n \"refseq:NC_000024.10\",\n \"SEGUID:Aa5HItLyfT0VRdz6r0SjqaidoCQ\",\n - \ \"SHA1:01ae4722d2f27d3d1545dcfaaf44a3a9a89da024\",\n \"VMC:GS_8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\",\n - \ \"sha512t24u:8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\",\n \"ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\"\n - \ ],\n \"alphabet\": \"ACGNRSTWY\",\n \"length\": 57227415\n}\n" - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/GRCh38:Y?start=2781703&end=2781704 - response: - body: - string: G - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/metadata/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5 - response: - body: - string: "{\n \"added\": \"2016-08-27T23:57:42Z\",\n \"aliases\": [\n \"GRCh38:Y\",\n - \ \"GRCh38:chrY\",\n \"GRCh38.p1:Y\",\n \"GRCh38.p1:chrY\",\n \"GRCh38.p10:Y\",\n - \ \"GRCh38.p10:chrY\",\n \"GRCh38.p11:Y\",\n \"GRCh38.p11:chrY\",\n - \ \"GRCh38.p12:Y\",\n \"GRCh38.p12:chrY\",\n \"GRCh38.p2:Y\",\n \"GRCh38.p2:chrY\",\n - \ \"GRCh38.p3:Y\",\n \"GRCh38.p3:chrY\",\n \"GRCh38.p4:Y\",\n \"GRCh38.p4:chrY\",\n - \ \"GRCh38.p5:Y\",\n \"GRCh38.p5:chrY\",\n \"GRCh38.p6:Y\",\n \"GRCh38.p6:chrY\",\n - \ \"GRCh38.p7:Y\",\n \"GRCh38.p7:chrY\",\n \"GRCh38.p8:Y\",\n \"GRCh38.p8:chrY\",\n - \ \"GRCh38.p9:Y\",\n \"GRCh38.p9:chrY\",\n \"MD5:447f54a94ef525e42ce58d3e0c48b3f8\",\n - \ \"NCBI:NC_000024.10\",\n \"refseq:NC_000024.10\",\n \"SEGUID:Aa5HItLyfT0VRdz6r0SjqaidoCQ\",\n - \ \"SHA1:01ae4722d2f27d3d1545dcfaaf44a3a9a89da024\",\n \"VMC:GS_8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\",\n - \ \"sha512t24u:8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\",\n \"ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\"\n - \ ],\n \"alphabet\": \"ACGNRSTWY\",\n \"length\": 57227415\n}\n" - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781703&end=2781704 - response: - body: - string: G - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/GRCh38:Y?start=2781760&end=2781761 - response: - body: - string: C - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781760&end=2781761 - response: - body: - string: C - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/GRCh38:Y?start=2781760&end=2781762 - response: - body: - string: CA - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781760&end=2781762 - response: - body: - string: CA - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781761&end=2781762 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781762&end=2781763 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781763&end=2781764 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781764&end=2781765 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781765&end=2781766 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781766&end=2781767 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781767&end=2781768 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781768&end=2781769 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781769&end=2781770 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781770&end=2781771 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781771&end=2781772 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781772&end=2781773 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781773&end=2781774 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781774&end=2781775 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781775&end=2781776 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781776&end=2781777 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781777&end=2781778 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781778&end=2781779 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781779&end=2781780 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781780&end=2781781 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781781&end=2781782 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781782&end=2781783 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781783&end=2781784 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781784&end=2781785 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781785&end=2781786 - response: - body: - string: G - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781761&end=2781761 - response: - body: - string: '' - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781762&end=2781785 - response: - body: - string: AAAAAAAAAAAAAAAAAAAAAAA - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781761&end=2781785 - response: - body: - string: AAAAAAAAAAAAAAAAAAAAAAAA - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/GRCh38:Y?start=1999989&end=1999990 - response: - body: - string: N - headers: {} - status: - code: 200 - message: OK -version: 1 diff --git a/tests/integration/functions/cassettes/test_get_caf/test_get_caf_no_results_returned.yaml b/tests/integration/functions/cassettes/test_get_caf/test_get_caf_no_results_returned.yaml index eb92b7b..7bcf357 100644 --- a/tests/integration/functions/cassettes/test_get_caf/test_get_caf_no_results_returned.yaml +++ b/tests/integration/functions/cassettes/test_get_caf/test_get_caf_no_results_returned.yaml @@ -1,4 +1,20 @@ interactions: +- request: + body: null + headers: {} + method: GET + uri: http://localhost:5000/seqrepo/1/ping + response: + body: + string: "{\n \"dependencies\": {\n \"bioutils\": {\n \"url\": \"https://github.com/biocommons/bioutils/\",\n + \ \"version\": \"0.5.8.post1\"\n },\n \"seqrepo\": {\n \"root\": + \"/usr/local/share/seqrepo\",\n \"url\": \"https://github.com/biocommons/biocommons.seqrepo/\",\n + \ \"version\": \"0.6.6\"\n }\n },\n \"url\": \"https://github.com/biocommons/seqrepo-rest-service/\",\n + \ \"version\": \"0.2.3.dev0+ge4124b9.d20231114\"\n}\n" + headers: {} + status: + code: 200 + message: OK - request: body: null headers: {} diff --git a/tests/integration/functions/cassettes/test_get_caf/test_get_caf_results_no___returned.yaml b/tests/integration/functions/cassettes/test_get_caf/test_get_caf_results_no___returned.yaml deleted file mode 100644 index eb92b7b..0000000 --- a/tests/integration/functions/cassettes/test_get_caf/test_get_caf_results_no___returned.yaml +++ /dev/null @@ -1,561 +0,0 @@ -interactions: -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/metadata/GRCh38:7 - response: - body: - string: "{\n \"added\": \"2016-08-27T21:23:35Z\",\n \"aliases\": [\n \"GRCh38:7\",\n - \ \"GRCh38:chr7\",\n \"GRCh38.p1:7\",\n \"GRCh38.p1:chr7\",\n \"GRCh38.p10:7\",\n - \ \"GRCh38.p10:chr7\",\n \"GRCh38.p11:7\",\n \"GRCh38.p11:chr7\",\n - \ \"GRCh38.p12:7\",\n \"GRCh38.p12:chr7\",\n \"GRCh38.p2:7\",\n \"GRCh38.p2:chr7\",\n - \ \"GRCh38.p3:7\",\n \"GRCh38.p3:chr7\",\n \"GRCh38.p4:7\",\n \"GRCh38.p4:chr7\",\n - \ \"GRCh38.p5:7\",\n \"GRCh38.p5:chr7\",\n \"GRCh38.p6:7\",\n \"GRCh38.p6:chr7\",\n - \ \"GRCh38.p7:7\",\n \"GRCh38.p7:chr7\",\n \"GRCh38.p8:7\",\n \"GRCh38.p8:chr7\",\n - \ \"GRCh38.p9:7\",\n \"GRCh38.p9:chr7\",\n \"MD5:cc044cc2256a1141212660fb07b6171e\",\n - \ \"NCBI:NC_000007.14\",\n \"refseq:NC_000007.14\",\n \"SEGUID:4+JjCcBVhPCr8vdIhUKFycPv8bY\",\n - \ \"SHA1:e3e26309c05584f0abf2f748854285c9c3eff1b6\",\n \"VMC:GS_F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul\",\n - \ \"sha512t24u:F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul\",\n \"ga4gh:SQ.F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul\"\n - \ ],\n \"alphabet\": \"ACGNRSTY\",\n \"length\": 159345973\n}\n" - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/GRCh38:7?start=140753335&end=140753336 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/metadata/ga4gh:SQ.F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul - response: - body: - string: "{\n \"added\": \"2016-08-27T21:23:35Z\",\n \"aliases\": [\n \"GRCh38:7\",\n - \ \"GRCh38:chr7\",\n \"GRCh38.p1:7\",\n \"GRCh38.p1:chr7\",\n \"GRCh38.p10:7\",\n - \ \"GRCh38.p10:chr7\",\n \"GRCh38.p11:7\",\n \"GRCh38.p11:chr7\",\n - \ \"GRCh38.p12:7\",\n \"GRCh38.p12:chr7\",\n \"GRCh38.p2:7\",\n \"GRCh38.p2:chr7\",\n - \ \"GRCh38.p3:7\",\n \"GRCh38.p3:chr7\",\n \"GRCh38.p4:7\",\n \"GRCh38.p4:chr7\",\n - \ \"GRCh38.p5:7\",\n \"GRCh38.p5:chr7\",\n \"GRCh38.p6:7\",\n \"GRCh38.p6:chr7\",\n - \ \"GRCh38.p7:7\",\n \"GRCh38.p7:chr7\",\n \"GRCh38.p8:7\",\n \"GRCh38.p8:chr7\",\n - \ \"GRCh38.p9:7\",\n \"GRCh38.p9:chr7\",\n \"MD5:cc044cc2256a1141212660fb07b6171e\",\n - \ \"NCBI:NC_000007.14\",\n \"refseq:NC_000007.14\",\n \"SEGUID:4+JjCcBVhPCr8vdIhUKFycPv8bY\",\n - \ \"SHA1:e3e26309c05584f0abf2f748854285c9c3eff1b6\",\n \"VMC:GS_F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul\",\n - \ \"sha512t24u:F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul\",\n \"ga4gh:SQ.F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul\"\n - \ ],\n \"alphabet\": \"ACGNRSTY\",\n \"length\": 159345973\n}\n" - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.F-LrLMe1SRpfUZHkQmvkVKFEGaoDeHul?start=140753335&end=140753336 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/metadata/GRCh38:Y - response: - body: - string: "{\n \"added\": \"2016-08-27T23:57:42Z\",\n \"aliases\": [\n \"GRCh38:Y\",\n - \ \"GRCh38:chrY\",\n \"GRCh38.p1:Y\",\n \"GRCh38.p1:chrY\",\n \"GRCh38.p10:Y\",\n - \ \"GRCh38.p10:chrY\",\n \"GRCh38.p11:Y\",\n \"GRCh38.p11:chrY\",\n - \ \"GRCh38.p12:Y\",\n \"GRCh38.p12:chrY\",\n \"GRCh38.p2:Y\",\n \"GRCh38.p2:chrY\",\n - \ \"GRCh38.p3:Y\",\n \"GRCh38.p3:chrY\",\n \"GRCh38.p4:Y\",\n \"GRCh38.p4:chrY\",\n - \ \"GRCh38.p5:Y\",\n \"GRCh38.p5:chrY\",\n \"GRCh38.p6:Y\",\n \"GRCh38.p6:chrY\",\n - \ \"GRCh38.p7:Y\",\n \"GRCh38.p7:chrY\",\n \"GRCh38.p8:Y\",\n \"GRCh38.p8:chrY\",\n - \ \"GRCh38.p9:Y\",\n \"GRCh38.p9:chrY\",\n \"MD5:447f54a94ef525e42ce58d3e0c48b3f8\",\n - \ \"NCBI:NC_000024.10\",\n \"refseq:NC_000024.10\",\n \"SEGUID:Aa5HItLyfT0VRdz6r0SjqaidoCQ\",\n - \ \"SHA1:01ae4722d2f27d3d1545dcfaaf44a3a9a89da024\",\n \"VMC:GS_8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\",\n - \ \"sha512t24u:8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\",\n \"ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\"\n - \ ],\n \"alphabet\": \"ACGNRSTWY\",\n \"length\": 57227415\n}\n" - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/GRCh38:Y?start=2781703&end=2781704 - response: - body: - string: G - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/metadata/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5 - response: - body: - string: "{\n \"added\": \"2016-08-27T23:57:42Z\",\n \"aliases\": [\n \"GRCh38:Y\",\n - \ \"GRCh38:chrY\",\n \"GRCh38.p1:Y\",\n \"GRCh38.p1:chrY\",\n \"GRCh38.p10:Y\",\n - \ \"GRCh38.p10:chrY\",\n \"GRCh38.p11:Y\",\n \"GRCh38.p11:chrY\",\n - \ \"GRCh38.p12:Y\",\n \"GRCh38.p12:chrY\",\n \"GRCh38.p2:Y\",\n \"GRCh38.p2:chrY\",\n - \ \"GRCh38.p3:Y\",\n \"GRCh38.p3:chrY\",\n \"GRCh38.p4:Y\",\n \"GRCh38.p4:chrY\",\n - \ \"GRCh38.p5:Y\",\n \"GRCh38.p5:chrY\",\n \"GRCh38.p6:Y\",\n \"GRCh38.p6:chrY\",\n - \ \"GRCh38.p7:Y\",\n \"GRCh38.p7:chrY\",\n \"GRCh38.p8:Y\",\n \"GRCh38.p8:chrY\",\n - \ \"GRCh38.p9:Y\",\n \"GRCh38.p9:chrY\",\n \"MD5:447f54a94ef525e42ce58d3e0c48b3f8\",\n - \ \"NCBI:NC_000024.10\",\n \"refseq:NC_000024.10\",\n \"SEGUID:Aa5HItLyfT0VRdz6r0SjqaidoCQ\",\n - \ \"SHA1:01ae4722d2f27d3d1545dcfaaf44a3a9a89da024\",\n \"VMC:GS_8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\",\n - \ \"sha512t24u:8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\",\n \"ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\"\n - \ ],\n \"alphabet\": \"ACGNRSTWY\",\n \"length\": 57227415\n}\n" - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781703&end=2781704 - response: - body: - string: G - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/GRCh38:Y?start=2781760&end=2781761 - response: - body: - string: C - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781760&end=2781761 - response: - body: - string: C - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/GRCh38:Y?start=2781760&end=2781762 - response: - body: - string: CA - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781760&end=2781762 - response: - body: - string: CA - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781761&end=2781762 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781762&end=2781763 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781763&end=2781764 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781764&end=2781765 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781765&end=2781766 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781766&end=2781767 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781767&end=2781768 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781768&end=2781769 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781769&end=2781770 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781770&end=2781771 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781771&end=2781772 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781772&end=2781773 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781773&end=2781774 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781774&end=2781775 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781775&end=2781776 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781776&end=2781777 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781777&end=2781778 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781778&end=2781779 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781779&end=2781780 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781780&end=2781781 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781781&end=2781782 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781782&end=2781783 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781783&end=2781784 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781784&end=2781785 - response: - body: - string: A - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781785&end=2781786 - response: - body: - string: G - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781761&end=2781761 - response: - body: - string: '' - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781762&end=2781785 - response: - body: - string: AAAAAAAAAAAAAAAAAAAAAAA - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5?start=2781761&end=2781785 - response: - body: - string: AAAAAAAAAAAAAAAAAAAAAAAA - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/metadata/GRCh38:chrY - response: - body: - string: "{\n \"added\": \"2016-08-27T23:57:42Z\",\n \"aliases\": [\n \"GRCh38:Y\",\n - \ \"GRCh38:chrY\",\n \"GRCh38.p1:Y\",\n \"GRCh38.p1:chrY\",\n \"GRCh38.p10:Y\",\n - \ \"GRCh38.p10:chrY\",\n \"GRCh38.p11:Y\",\n \"GRCh38.p11:chrY\",\n - \ \"GRCh38.p12:Y\",\n \"GRCh38.p12:chrY\",\n \"GRCh38.p2:Y\",\n \"GRCh38.p2:chrY\",\n - \ \"GRCh38.p3:Y\",\n \"GRCh38.p3:chrY\",\n \"GRCh38.p4:Y\",\n \"GRCh38.p4:chrY\",\n - \ \"GRCh38.p5:Y\",\n \"GRCh38.p5:chrY\",\n \"GRCh38.p6:Y\",\n \"GRCh38.p6:chrY\",\n - \ \"GRCh38.p7:Y\",\n \"GRCh38.p7:chrY\",\n \"GRCh38.p8:Y\",\n \"GRCh38.p8:chrY\",\n - \ \"GRCh38.p9:Y\",\n \"GRCh38.p9:chrY\",\n \"MD5:447f54a94ef525e42ce58d3e0c48b3f8\",\n - \ \"NCBI:NC_000024.10\",\n \"refseq:NC_000024.10\",\n \"SEGUID:Aa5HItLyfT0VRdz6r0SjqaidoCQ\",\n - \ \"SHA1:01ae4722d2f27d3d1545dcfaaf44a3a9a89da024\",\n \"VMC:GS_8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\",\n - \ \"sha512t24u:8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\",\n \"ga4gh:SQ.8_liLu1aycC0tPQPFmUaGXJLDs5SbPZ5\"\n - \ ],\n \"alphabet\": \"ACGNRSTWY\",\n \"length\": 57227415\n}\n" - headers: {} - status: - code: 200 - message: OK -- request: - body: null - headers: {} - method: GET - uri: http://localhost:5000/seqrepo/1/sequence/GRCh38:chrY?start=2781760&end=2781761 - response: - body: - string: C - headers: {} - status: - code: 200 - message: OK -version: 1 diff --git a/tests/integration/functions/cassettes/test_get_caf/test_get_caf_results_returned.yaml b/tests/integration/functions/cassettes/test_get_caf/test_get_caf_results_returned.yaml index eb92b7b..7bcf357 100644 --- a/tests/integration/functions/cassettes/test_get_caf/test_get_caf_results_returned.yaml +++ b/tests/integration/functions/cassettes/test_get_caf/test_get_caf_results_returned.yaml @@ -1,4 +1,20 @@ interactions: +- request: + body: null + headers: {} + method: GET + uri: http://localhost:5000/seqrepo/1/ping + response: + body: + string: "{\n \"dependencies\": {\n \"bioutils\": {\n \"url\": \"https://github.com/biocommons/bioutils/\",\n + \ \"version\": \"0.5.8.post1\"\n },\n \"seqrepo\": {\n \"root\": + \"/usr/local/share/seqrepo\",\n \"url\": \"https://github.com/biocommons/biocommons.seqrepo/\",\n + \ \"version\": \"0.6.6\"\n }\n },\n \"url\": \"https://github.com/biocommons/seqrepo-rest-service/\",\n + \ \"version\": \"0.2.3.dev0+ge4124b9.d20231114\"\n}\n" + headers: {} + status: + code: 200 + message: OK - request: body: null headers: {} diff --git a/tests/integration/functions/cassettes/test_get_caf/test_get_caf_variant_not_registered.yaml b/tests/integration/functions/cassettes/test_get_caf/test_get_caf_variant_not_registered.yaml index eb92b7b..7bcf357 100644 --- a/tests/integration/functions/cassettes/test_get_caf/test_get_caf_variant_not_registered.yaml +++ b/tests/integration/functions/cassettes/test_get_caf/test_get_caf_variant_not_registered.yaml @@ -1,4 +1,20 @@ interactions: +- request: + body: null + headers: {} + method: GET + uri: http://localhost:5000/seqrepo/1/ping + response: + body: + string: "{\n \"dependencies\": {\n \"bioutils\": {\n \"url\": \"https://github.com/biocommons/bioutils/\",\n + \ \"version\": \"0.5.8.post1\"\n },\n \"seqrepo\": {\n \"root\": + \"/usr/local/share/seqrepo\",\n \"url\": \"https://github.com/biocommons/biocommons.seqrepo/\",\n + \ \"version\": \"0.6.6\"\n }\n },\n \"url\": \"https://github.com/biocommons/seqrepo-rest-service/\",\n + \ \"version\": \"0.2.3.dev0+ge4124b9.d20231114\"\n}\n" + headers: {} + status: + code: 200 + message: OK - request: body: null headers: {} diff --git a/tests/unit/anyvar/cassettes/test_clients/test_get_registered_allele_expressions_populated[anyvar_populated_python_client].yaml b/tests/unit/anyvar/cassettes/test_clients/test_get_registered_allele_expressions_populated[anyvar_populated_python_client].yaml index 661881e..a1a16cc 100644 --- a/tests/unit/anyvar/cassettes/test_clients/test_get_registered_allele_expressions_populated[anyvar_populated_python_client].yaml +++ b/tests/unit/anyvar/cassettes/test_clients/test_get_registered_allele_expressions_populated[anyvar_populated_python_client].yaml @@ -1,4 +1,20 @@ interactions: +- request: + body: null + headers: {} + method: GET + uri: http://localhost:5000/seqrepo/1/ping + response: + body: + string: "{\n \"dependencies\": {\n \"bioutils\": {\n \"url\": \"https://github.com/biocommons/bioutils/\",\n + \ \"version\": \"0.5.8.post1\"\n },\n \"seqrepo\": {\n \"root\": + \"/usr/local/share/seqrepo\",\n \"url\": \"https://github.com/biocommons/biocommons.seqrepo/\",\n + \ \"version\": \"0.6.6\"\n }\n },\n \"url\": \"https://github.com/biocommons/seqrepo-rest-service/\",\n + \ \"version\": \"0.2.3.dev0+ge4124b9.d20231114\"\n}\n" + headers: {} + status: + code: 200 + message: OK - request: body: null headers: {} diff --git a/tests/unit/anyvar/cassettes/test_clients/test_get_registered_allele_expressions_unpopulated[anyvar_python_client].yaml b/tests/unit/anyvar/cassettes/test_clients/test_get_registered_allele_expressions_unpopulated[anyvar_python_client].yaml index 661881e..a1a16cc 100644 --- a/tests/unit/anyvar/cassettes/test_clients/test_get_registered_allele_expressions_unpopulated[anyvar_python_client].yaml +++ b/tests/unit/anyvar/cassettes/test_clients/test_get_registered_allele_expressions_unpopulated[anyvar_python_client].yaml @@ -1,4 +1,20 @@ interactions: +- request: + body: null + headers: {} + method: GET + uri: http://localhost:5000/seqrepo/1/ping + response: + body: + string: "{\n \"dependencies\": {\n \"bioutils\": {\n \"url\": \"https://github.com/biocommons/bioutils/\",\n + \ \"version\": \"0.5.8.post1\"\n },\n \"seqrepo\": {\n \"root\": + \"/usr/local/share/seqrepo\",\n \"url\": \"https://github.com/biocommons/biocommons.seqrepo/\",\n + \ \"version\": \"0.6.6\"\n }\n },\n \"url\": \"https://github.com/biocommons/seqrepo-rest-service/\",\n + \ \"version\": \"0.2.3.dev0+ge4124b9.d20231114\"\n}\n" + headers: {} + status: + code: 200 + message: OK - request: body: null headers: {} diff --git a/tests/unit/anyvar/cassettes/test_clients/test_put_allele_expressions[anyvar_python_client].yaml b/tests/unit/anyvar/cassettes/test_clients/test_put_allele_expressions[anyvar_python_client].yaml index 661881e..a1a16cc 100644 --- a/tests/unit/anyvar/cassettes/test_clients/test_put_allele_expressions[anyvar_python_client].yaml +++ b/tests/unit/anyvar/cassettes/test_clients/test_put_allele_expressions[anyvar_python_client].yaml @@ -1,4 +1,20 @@ interactions: +- request: + body: null + headers: {} + method: GET + uri: http://localhost:5000/seqrepo/1/ping + response: + body: + string: "{\n \"dependencies\": {\n \"bioutils\": {\n \"url\": \"https://github.com/biocommons/bioutils/\",\n + \ \"version\": \"0.5.8.post1\"\n },\n \"seqrepo\": {\n \"root\": + \"/usr/local/share/seqrepo\",\n \"url\": \"https://github.com/biocommons/biocommons.seqrepo/\",\n + \ \"version\": \"0.6.6\"\n }\n },\n \"url\": \"https://github.com/biocommons/seqrepo-rest-service/\",\n + \ \"version\": \"0.2.3.dev0+ge4124b9.d20231114\"\n}\n" + headers: {} + status: + code: 200 + message: OK - request: body: null headers: {} diff --git a/tests/unit/anyvar/cassettes/test_clients/test_put_allele_expressions_handle_invalid[anyvar_populated_python_client].yaml b/tests/unit/anyvar/cassettes/test_clients/test_put_allele_expressions_handle_invalid[anyvar_populated_python_client].yaml index 661881e..a1a16cc 100644 --- a/tests/unit/anyvar/cassettes/test_clients/test_put_allele_expressions_handle_invalid[anyvar_populated_python_client].yaml +++ b/tests/unit/anyvar/cassettes/test_clients/test_put_allele_expressions_handle_invalid[anyvar_populated_python_client].yaml @@ -1,4 +1,20 @@ interactions: +- request: + body: null + headers: {} + method: GET + uri: http://localhost:5000/seqrepo/1/ping + response: + body: + string: "{\n \"dependencies\": {\n \"bioutils\": {\n \"url\": \"https://github.com/biocommons/bioutils/\",\n + \ \"version\": \"0.5.8.post1\"\n },\n \"seqrepo\": {\n \"root\": + \"/usr/local/share/seqrepo\",\n \"url\": \"https://github.com/biocommons/biocommons.seqrepo/\",\n + \ \"version\": \"0.6.6\"\n }\n },\n \"url\": \"https://github.com/biocommons/seqrepo-rest-service/\",\n + \ \"version\": \"0.2.3.dev0+ge4124b9.d20231114\"\n}\n" + headers: {} + status: + code: 200 + message: OK - request: body: null headers: {}