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consider changing .INI files to .TOML

enhancementNew feature or requestNew feature or request

Status: Open.

#28 In CountESS-Project/CountESS;

· nickzoic opened on Feb 13, 2024

Support for loading files wrapped in .gz and .bz2 (also file metadata)

enhancementNew feature or requestNew feature or request

Status: Open.

#14 In CountESS-Project/CountESS;

· nickzoic opened on Apr 12, 2023

calculating file hashes is far too slow.

optimisationPerformance optimisationPerformance optimisation

Status: Open.

#16 In CountESS-Project/CountESS;

· nickzoic opened on May 4, 2023

Always Be Saving

enhancementNew feature or requestNew feature or request

Status: Open.

#42 In CountESS-Project/CountESS;

· nickzoic opened on Oct 25, 2024

Save Config behaviour

enhancementNew feature or requestNew feature or request

Status: Open.

#26 In CountESS-Project/CountESS;

· nickzoic opened on Sep 8, 2023

variant classifier needs to recognize ins and del

enhancementNew feature or requestNew feature or request

Status: Open.

#48 In CountESS-Project/CountESS;

· nickzoic opened on Jan 15, 2026

gui logger improvements

enhancementNew feature or requestNew feature or request

Status: Open.

#41 In CountESS-Project/CountESS;

· nickzoic opened on Apr 16, 2024

Exemplar workflows

workflowRelated to a specific workflow or analysisRelated to a specific workflow or analysis

Status: Open.

#49 In CountESS-Project/CountESS;

· afrubin opened on Mar 12, 2026

VAMP-seq workflow

workflowRelated to a specific workflow or analysisRelated to a specific workflow or analysis

Status: Open.

#50 In CountESS-Project/CountESS;

· afrubin opened on Mar 12, 2026

WLS regression workflow

workflowRelated to a specific workflow or analysisRelated to a specific workflow or analysis

Status: Open.

#51 In CountESS-Project/CountESS;

· afrubin opened on Mar 12, 2026

Log ratio workflow

workflowRelated to a specific workflow or analysisRelated to a specific workflow or analysis

Status: Open.

#52 In CountESS-Project/CountESS;

· afrubin opened on Mar 12, 2026

FASTQ sorting plugin

enhancementNew feature or requestNew feature or request

Status: Open.

#53 In CountESS-Project/CountESS;

· afrubin opened on Mar 12, 2026